Factsheet for Zm00001d039731_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012396_P003
Zm00001d016330_P001
Zm00001d021426_P002
Zm00001d025112_P001
Zm00001d041530_P001
Zm00001d041766_P001
Zm00001d042792_P002
Zm00001d042879_P002
Zm00001d044810_P001
Zm00001d046810_P002
Zm00001d053142_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27720.1	Zm00001d012396_P003	AT1G17440.1	17340043
AT1G27720.1	Zm00001d042879_P002	AT1G17440.1	17340043
AT1G27720.1	Zm00001d021426_P002	AT1G50300.1	17340043
AT1G27720.1	Zm00001d042792_P002	AT3G10070.1	17340043
AT1G27720.1	Zm00001d041530_P001	AT4G34340.1	17340043
AT1G27720.1	Zm00001d041766_P001	AT4G34340.1	17340043
AT1G27720.1	Zm00001d016330_P001	AT5G25150.1	17340043
AT1G27720.1	Zm00001d025112_P001	AT5G25150.1	17340043
AT1G27720.1	Zm00001d044810_P001	AT5G25150.1	17340043
AT1G27720.1	Zm00001d046810_P002	AT5G25150.1	17340043
AT1G27720.1	Zm00001d053142_P001	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039729_P004	Maize	nucleus	92.02	62.61
KXG31790	Sorghum	nucleus	79.28	56.5
Os02t0654400-01	Rice	nucleus	52.28	37.77
TraesCS6A01G242900.1	Wheat	nucleus	56.27	37.19
HORVU6Hr1G062340.1	Barley	nucleus	55.13	36.62
TraesCS6B01G281300.1	Wheat	nucleus	55.13	36.48
TraesCS6D01G225200.2	Wheat	endoplasmic reticulum, nucleus, peroxisome, plastid	55.89	35.08
CDX71498	Canola	cytosol	4.75	23.58
CDY68956	Canola	nucleus	23.19	22.18
GSMUA_Achr4P03380_001	Banana	nucleus	29.85	17.88
GSMUA_Achr4P14210_001	Banana	nucleus	26.62	16.65
Bra035961.1-P	Field mustard	nucleus	23.19	15.66
Bra033662.1-P	Field mustard	nucleus	22.43	15.3
CDY25235	Canola	nucleus	22.62	15.12
CDY22365	Canola	nucleus	22.24	15.12
Zm00001d029598_P003	Maize	nucleus	26.05	14.76
KRH61389	Soybean	nucleus	25.29	14.54
KRH52077	Soybean	nucleus	25.29	14.26
AT5G43130.2	Thale cress	nucleus	23.0	14.2
CDY30789	Canola	mitochondrion	21.48	13.88
Solyc04g078050.2.1	Tomato	nucleus	24.52	13.81
VIT_18s0001g09310.t01	Wine grape	nucleus	24.14	13.71
AT1G27720.1	Thale cress	nucleus	18.44	13.47
KRH15434	Soybean	nucleus	23.76	13.37
CDY60273	Canola	nucleus	17.87	13.09
KRH05606	Soybean	mitochondrion	23.38	12.6
Bra030061.1-P	Field mustard	mitochondrion, nucleus	18.25	11.96
PGSC0003DMT400055395	Potato	nucleus	13.12	11.77
CDY03944	Canola	nucleus	17.68	10.94
CDY58727	Canola	peroxisome	1.71	9.09
CDX71499	Canola	nucleus	0.0	0.0
CDY46486	Canola	nucleus, plastid	0.0	0.0

Protein Annotations

MapMan:15.3.5.3.4	UniProt:A0A1D6MKW2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005669	GO:GO:0006139	GO:GO:0006352	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	ProteinID:ONM29848.1
PFAM:PF05236	PFAM:PF12174	PANTHER:PTHR15138	PANTHER:PTHR15138:SF16	InterPro:RST	InterPro:TAF4
UniParc:UPI0002216FD1	EnsemblPlantsGene:Zm00001d039731	EnsemblPlants:Zm00001d039731_P002	EnsemblPlants:Zm00001d039731_T002	SEG:seg	:

Description

Transcription initiation factor TFIID subunit 4b

Coordinates

chr3:-:13151690..13170852

Molecular Weight (calculated)

57159.7 Da

IEP (calculated)

9.955

GRAVY (calculated)

-0.947

Length

526 amino acids

Sequence
(BLAST)

001: MSKAPDDHLQ ATEQEGSVHP SQQAGQQHVN AAYQFSKTEL TEGSKNEQPV QVEQLSSHLQ QAYPEIQLQQ AETDSFQLAE KETGYFGQQS FAGAKVDVAQ
101: PSVVQQNVKQ TVGQQASSGT QDTRKGPSIP FNMLIPILQA HLDRDKDMQL QTVWAKLRRN EVNKDDFLRV TVNIVGDQML KQAAHKVFVQ MQAQMQRNSQ
201: ANSSQQSLFS QLSAQQMASS GSAQLHDQKI RPPGPPNQGQ KNQVSSSPQA FAPPSGTQPQ NSVHYLAHDN PNQNPDAKGT NVVPNQPSRM NTSVPLQTKD
301: KQHQPTQLQQ ASQQIYGANN PGAQAYPRSI TGSLRSPSPV PETQPSMHAP GMAPAKMVPP PTHPMMQHNA TAWKMHQNRE LKTNAPPPNA NMKQNSESVG
401: KVRMAGTGNS SAKGKQGTPN STPNASGGTK SSKKSGGQKK SLEAAGSMQP SSKKQKKSGA PQEQSIDELN DVTAASGVNI REEEEQLLSA PKEESFASQE
501: ARRIAQEEEN IFLRKGPLLR KLAEIG

Best Arabidopsis Sequence Match ( AT5G43130.1 )
(BLAST)

001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ

Arabidopsis Description

TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.