Factsheet for Solyc04g078050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g122020.2.1
Solyc06g062900.2.1
Solyc06g065700.2.1
Solyc09g008150.1.1
Solyc09g009680.2.1
Solyc11g040050.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27720.1	Solyc03g122020.2.1	AT1G17440.1	17340043
AT1G27720.1	Solyc06g062900.2.1	AT1G17440.1	17340043
AT1G27720.1	Solyc11g040050.1.1	AT1G50300.1	17340043
AT1G27720.1	Solyc09g009680.2.1	AT3G10070.1	17340043
AT1G27720.1	Solyc09g008150.1.1	AT4G34340.1	17340043
AT1G27720.1	Solyc06g065700.2.1	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055395	Potato	nucleus	51.5	82.08
CDX71498	Canola	cytosol	7.39	65.09
CDX71499	Canola	nucleus	9.1	53.46
VIT_18s0001g09310.t01	Wine grape	nucleus	51.28	51.73
KRH61389	Soybean	nucleus	46.47	47.43
KRH15434	Soybean	nucleus	47.43	47.38
KRH52077	Soybean	nucleus	47.22	47.27
GSMUA_Achr4P14200_001	Banana	cytosol	3.43	47.06
Bra035961.1-P	Field mustard	nucleus	38.22	45.83
Bra033662.1-P	Field mustard	nucleus	37.79	45.78
KRH05606	Soybean	mitochondrion	46.9	44.88
AT5G43130.2	Thale cress	nucleus	39.72	43.54
Os03t0441000-01	Rice	nucleus	35.33	40.29
TraesCS4A01G163100.1	Wheat	nucleus	35.44	39.55
TraesCS4B01G150300.3	Wheat	nucleus	35.76	39.34
TraesCS4D01G160000.1	Wheat	nucleus	35.22	38.89
HORVU4Hr1G034590.13	Barley	cytosol, nucleus	35.22	37.86
OQU92338	Sorghum	nucleus	36.19	37.51
AT1G27720.1	Thale cress	nucleus	28.59	37.08
Os02t0654400-01	Rice	nucleus	28.27	36.26
KXG31790	Sorghum	nucleus	28.48	36.04
Zm00001d029598_P003	Maize	nucleus	35.01	35.24
Zm00001d039729_P004	Maize	nucleus	28.59	34.54
TraesCS6B01G281300.1	Wheat	nucleus	28.27	33.21
HORVU6Hr1G062340.1	Barley	nucleus	28.16	33.21
TraesCS6A01G242900.1	Wheat	nucleus	28.05	32.91
TraesCS6D01G225200.2	Wheat	endoplasmic reticulum, nucleus, peroxisome, plastid	28.16	31.38
Bra030061.1-P	Field mustard	mitochondrion, nucleus	26.02	30.26
Zm00001d039731_P002	Maize	nucleus	13.81	24.52

Protein Annotations

MapMan:15.3.5.3.4	ncoils:Coil	GO:GO:0001075	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0003713	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006352
GO:GO:0008134	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0045944	GO:GO:0051123	UniProt:K4BUP2	PFAM:PF05236	PFAM:PF12174	PANTHER:PTHR15138
PANTHER:PTHR15138:SF14	InterPro:RST	EnsemblPlantsGene:Solyc04g078050.2	EnsemblPlants:Solyc04g078050.2.1	InterPro:TAF4	UniParc:UPI000276685E
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:62897736..62910175

Molecular Weight (calculated)

102671.0 Da

IEP (calculated)

7.479

GRAVY (calculated)

-0.858

Length

934 amino acids

Sequence
(BLAST)

001: MDPSIMKLLE EDEDETMHSG ADVEAFTAAL NRDIGGDNSQ SQPSDSDSVP LSQGSSYTSN QFAPWQTANH DENASRCNLQ DSETIQPKEE NVSDMQLKRL
101: DTDSQNQQQK NDSSQEINSL PVQHISQDSY QTTEVEQDTL HSSRAVNMPN PEKNTQNPES PHLNLQGTNN LQPMQSLTTG TSSLPRVATV ASNQSESATG
201: SISQAAMNIA KQGKQVPFAM LFPHIQPQLD KDRAAQLQTL YVKLKKNEIS KESFVRNMRS IIGDQMLKMA VYKFQSQASK NSQSVPGQFP QSQASQQQHS
301: LMPADDSSNM AIESKAQKLH EVENQADLRG AQGSQMSSSS LTAVKQERDH TPFPIQGLNR QQQQHLHFSQ ASFPTFANAG NNYSAYSASN VNSSTTQPLK
401: QQSDDAQMRQ ISVQQNRNAT QFGVPAQAMG IMSAPKFEKQ NTFGEAKRLP GGGLNMSSTS RIQQTSVQWQ PSANKEQKSI LSSPMTNPKP EPIDHFHDQL
501: QRSQLSPFSS VQVDQGNSTS ESSRDESIEQ TSRIGLSSTT SMKPSNSASS SMSSHMDTST LLTSRTLSVT SPLGLGNNGK TPVKKPSIGQ KKPLDALGSS
601: PPPSGKKQKV SGGFLDQSIE QLNDVTAVSG VNLREEEEQL FSGPKEDSRV SEASRRVVQE EEERLILQKI PLQKKLTEIM AKCGLKSMSS DVERCLSLCV
701: EERMRGLISS LIRLSKQRVD IEKSRHRTIV TSDVREEIMS INRKAREEWE RKQADVEKLQ KANEPEGSTG VDGDKEKDEG RGKSIKVNKE EDDKMRTTAA
801: NVAARAAVGG DDMLSKWQLM AEQARQKREG GGDVASGSQP GKDVTRKNLP APPRSSRDPQ EAEKRIQSSA IAPPGVVRRA VRTQGIITQT RIARSITVKD
901: VIAVLEREPQ MSKSTLIYRL YEKARSNASS AESS

Best Arabidopsis Sequence Match ( AT5G43130.1 )
(BLAST)

001: MDPSIFKLLE EDEDESMHSG ADVDAFQAAL NRDIEGSMTT SIPHVTNPGN NHSSRQQFST WKNGIGDSNI NVQTQHSLES TQMKEQEGST LENQHQHDLK
101: RANEPHLQHN QPQDLHRAGQ LWENPSQVPQ STGLPISEKN PTGNESDRSH NQESESQYMK LQKMSSQQAR GVEPPVNPMN VNPINRNPKQ VPFAALLPTL
201: MNQLDKDRAL QLRTLYARLK KNEIPKEGFT RHMKDIVGDQ MLRMAVSKLQ QVNYNQGKIG IQAPSTEINN QKSQSDPRAV HLNQLPSSAS GTLGSSVPVQ
301: GLTKHPQHQM QHPPSSFPMY TTSGSFHSFP GPNTNASGST LRPHLHDSHM RHVAHNQPMG STGLGGPPQS TTNMMTMPKF ERPSSVNDPS RVQGGATSHF
401: QNSSSLPLNS APGQGSSVSH VKQESVDQSF EKNNAASMTS NEDLEKESSR MVLSTPNNMA PASSVSPSMT TQLDASTTMN SRGPLGTSQG GANARMPPKK
501: PSVGQKKPLE TLGSSPPPPS KKQKVAGNSM DQSIEQLNDV TAVSGVNLRE EEEQLFSGAK EDGRVSEASR RVVHEEEERL ILQKNPLQRK LAEIMAKAGL
601: KQISNDVERC LSLCVEERMR GLLSHIIRLS KQRVDAEKSR HRTFITSDIR LQINEMNQKV KEEWEKKQAE AEKLKKPSES EEGDGGVDSE KDKEDNRSKG
701: VKGNKEDDDK MRTTAANVAA RAAVGGDDAF LKWQLMAEAR QKSVSEAGKD GNQKTTSGGG KNSKDRQDGG RRFSGTGGRR VGKNQGSSLQ PKVVRTISVK
801: DVVAVLEREP QMSKSTLMYR LIQ

Arabidopsis Description

TAF4BTranscription initiation factor TFIID subunit 4b [Source:UniProtKB/Swiss-Prot;Acc:F4K4L7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.