Factsheet for Solyc09g009680.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g078300.2.1
Solyc03g122020.2.1
Solyc04g010090.2.1
Solyc04g078050.2.1
Solyc05g010570.2.1
Solyc05g018120.1.1
Solyc06g036200.1.1
Solyc06g062900.2.1
Solyc06g065700.2.1
Solyc07g006820.2.1
Solyc09g008150.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10070.1	Solyc02g078300.2.1	AT1G02680.1	17340043
AT3G10070.1	Solyc06g036200.1.1	AT1G02680.1	17340043
AT3G10070.1	Solyc03g122020.2.1	AT1G17440.1	17340043
AT3G10070.1	Solyc06g062900.2.1	AT1G17440.1	17340043
AT3G10070.1	Solyc04g078050.2.1	AT1G27720.1	17340043
AT3G10070.1	Solyc07g006820.2.1	AT1G32750.1	17340043
AT3G10070.1	Solyc04g010090.2.1	AT1G54140.1	17340043
AT3G10070.1	Solyc05g010570.2.1	AT4G20280.1	17340043
AT3G10070.1	Solyc05g018120.1.1	AT4G20280.1	17340043
AT3G10070.1	Solyc09g008150.1.1	AT4G34340.1	17340043
AT3G10070.1	Solyc06g065700.2.1	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023148	Potato	nucleus, plastid	88.52	89.3
VIT_08s0007g03700.t01	Wine grape	nucleus	36.75	55.91
KRH30849	Soybean	nucleus, plastid	42.05	46.94
KRH32724	Soybean	nucleus, plastid	39.4	43.98
CDY00904	Canola	nucleus, plastid	39.22	42.13
Bra029816.1-P	Field mustard	nucleus, plastid	38.87	41.75
CDY60164	Canola	nucleus, plastid	38.87	41.75
AT3G10070.1	Thale cress	nucleus, plastid	39.75	41.74
Os01t0858500-01	Rice	plastid	21.02	39.53
Bra034092.1-P	Field mustard	plastid	18.73	39.41
GSMUA_Achr10P...	Banana	plastid	24.03	38.2
EES03919	Sorghum	nucleus, plastid	30.39	34.54
TraesCS3B01G403500.1	Wheat	nucleus	30.74	31.81
CDY41320	Canola	plastid	19.26	31.59
TraesCS3A01G371300.1	Wheat	nucleus, plastid	30.74	31.41
HORVU3Hr1G084430.4	Barley	plastid	30.04	31.19
TraesCS3D01G364400.1	Wheat	cytosol, plastid	29.68	30.71
Zm00001d042792_P002	Maize	nucleus, plastid	26.68	30.69
CDY22214	Canola	plastid	18.37	30.5
Solyc06g062900.2.1	Tomato	nucleus	12.19	28.75
Solyc03g122020.2.1	Tomato	nucleus, plastid	21.73	19.16

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	GO:GO:0000124	GO:GO:0001102	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669
GO:GO:0006139	GO:GO:0006352	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0017025	GO:GO:0019538	GO:GO:0043966
GO:GO:0046695	GO:GO:0046982	GO:GO:0051123	InterPro:Histone-fold	InterPro:IPR009072	UniProt:K4CQZ7
PFAM:PD012998	PFAM:PF03847	PANTHER:PTHR12264	PANTHER:PTHR12264:SF21	SUPFAM:SSF47113	EnsemblPlantsGene:Solyc09g009680.2
EnsemblPlants:Solyc09g009680.2.1	InterPro:TAF12	InterPro:TFIID_TAF12_dom	UniParc:UPI000276C6E3	SEG:seg	:

Description

Transcription initiation factor TFIID subunit 12 [Source:Projected from Arabidopsis thaliana (AT3G10070) UniProtKB/Swiss-Prot;Acc:Q9SR71]

Coordinates

chr9:+:3073330..3079860

Molecular Weight (calculated)

59490.0 Da

IEP (calculated)

10.757

GRAVY (calculated)

-0.587

Length

566 amino acids

Sequence
(BLAST)

001: MEQSQPPPTT PVPAPATPIS QPAEPIPATS PALPPPSSAP ISQLPSTTTT TSVASQPLNL NPTTTTTTSA TKTTTTTTTS SGTKTITTTT TTISPGGTIT
101: AAAVQQQNPS AATSQQNAQI RQPFGRPWQQ PSPFQHFSLP PPPPPPPPHS SSSSSSVSSS SVSMQNQNPR GGMAMGVPAH HPSSSFSSLT TPSYGQQFGG
201: LGRNLPDSTP PTSTTSQVRQ PIQGMHGMGM MGSLGSTSPM RPAGISPQQL RPVSSAIRPQ TSIGSQSAAT QNFQGHSMLR VQSVGFPPSQ SHTTTSQSPK
301: TQTQPWLSSG APGKPPLPTP SLRPQINPQS LHQRSHILAA HQHTVTTSSS AQQSQPSTSS QSQDHLGQQM PPSRIQQSLS NQALGRGQGL GIQRPSSHAL
401: MQPTAVQPGL PSKAATTLEM GDPCTRILSK RSIQEIVTQI DPSEKLDAEV EDILVDIAEE FVESITTFGC SLAKHRKSNT LEAKDILLHL ERNWNMTLPG
501: FGGDEIRAYK KPLTSDIHKE RIAAIKKSTL VAEMTNAKGP TQTGGNMKSH LAKNAANIMG SPNAKT

Best Arabidopsis Sequence Match ( AT3G10070.1 )
(BLAST)

001: MDQPRQSSTA SQPPETPPQP SDSKPSTLTQ IQPTPSTNPS PSSVVSSIPS SPAPQSPSLN PNPNPPQYTR PVTSPATQQQ QHLSQPLVRP PPQAYSRPWQ
101: QHSSYTHFSS ASSPLLSSSS APASSSSSLP ISGQQRGGMA IGVPASPIPS PSPTPSQHSP SAFPGSFGQQ YGGLGRGTVG MSEATSNTSS PQVRMMQGTQ
201: GIGMMGTLGS GSQIRPSGMT QHQQRPTQSS LRPASSTSTQ SPVAQNFQGH SLMRPSPISS PNVQSTGASQ QSLQAINQPW LSSTPQGKPP LPPPSYRPQV
301: NSPSMQQRPH IPQQHISTSA ATPQPQQQQS QQQHQPQEQL QQLRSPQQPL AHPHQPTRVQ GLVNQKVTSP VMPSQPPVAQ PGNHAKTVSA ETEPSDDRIL
401: GKRSIHELLQ QIDPSEKLDP EVEDILSDIA EDFVESITTF GCSLAKHRKS DILEAKDILL HVERNWNIRP PGFSSDEFKT FRKPLTTDIH KERLAAIKKS
501: VTATEAANAR NQFGHGTANA RGGQAKTPSN PMGSTTFNH

Arabidopsis Description

TAF12Transcription initiation factor TFIID subunit 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR71]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.