CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75423
CDX78982
CDX81826
CDX84083
CDX87098
CDX89953
CDY02479
CDY03944
CDY05378
CDY05473
CDY15256
CDY15437
CDY19814
CDY21749
CDY26139
CDY26245
CDY31444
CDY44660
CDY48302
CDY56625
CDY60273
CDY67613
CDY69783
CDY71056

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10070.1	CDX89953	AT1G02680.1	17340043
AT3G10070.1	CDY15256	AT1G02680.1	17340043
AT3G10070.1	CDY15437	AT1G02680.1	17340043
AT3G10070.1	CDY71056	AT1G02680.1	17340043
AT3G10070.1	CDX81826	AT1G17440.1	17340043
AT3G10070.1	CDY21749	AT1G17440.1	17340043
AT3G10070.1	CDY26245	AT1G17440.1	17340043
AT3G10070.1	CDY48302	AT1G17440.1	17340043
AT3G10070.1	CDY03944	AT1G27720.1	17340043
AT3G10070.1	CDY60273	AT1G27720.1	17340043
AT3G10070.1	CDX84083	AT1G32750.1	17340043
AT3G10070.1	CDY44660	AT1G32750.1	17340043
AT3G10070.1	CDY02479	AT1G54140.1	17340043
AT3G10070.1	CDY26139	AT1G54140.1	17340043
AT3G10070.1	CDY56625	AT1G54140.1	17340043
AT3G10070.1	CDX78982	AT4G20280.1	17340043
AT3G10070.1	CDY31444	AT4G20280.1	17340043
AT3G10070.1	CDY67613	AT4G20280.1	17340043
AT3G10070.1	CDX75423	AT4G34340.1	17340043
AT3G10070.1	CDY69783	AT4G34340.1	17340043
AT3G10070.1	CDX87098	AT5G25150.1	17340043
AT3G10070.1	CDY05378	AT5G25150.1	17340043
AT3G10070.1	CDY05473	AT5G25150.1	17340043
AT3G10070.1	CDY19814	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60164	Canola	nucleus, plastid	88.61	88.61
AT3G10070.1	Thale cress	nucleus, plastid	75.33	73.65
VIT_08s0007g03700.t01	Wine grape	nucleus	39.09	55.38
CDY41320	Canola	plastid	33.97	51.88
CDY22214	Canola	plastid	29.41	45.45
KRH30849	Soybean	nucleus, plastid	41.56	43.2
KRH32724	Soybean	nucleus, plastid	39.66	41.22
PGSC0003DMT400023148	Potato	nucleus, plastid	42.88	40.29
Solyc09g009680.2.1	Tomato	nucleus, plastid	42.13	39.22
Os01t0858500-01	Rice	plastid	22.01	38.54
GSMUA_Achr10P...	Banana	plastid	25.05	37.08
Zm00001d042792_P002	Maize	nucleus, plastid	31.12	33.33
HORVU3Hr1G084430.4	Barley	plastid	34.16	33.03
TraesCS3D01G364400.1	Wheat	cytosol, plastid	33.4	32.18
TraesCS3B01G403500.1	Wheat	nucleus	32.83	31.63
EES03919	Sorghum	nucleus, plastid	29.79	31.53
TraesCS3A01G371300.1	Wheat	nucleus, plastid	32.83	31.23
CDY26245	Canola	plastid	25.81	20.89
CDY21749	Canola	plastid	22.01	20.71
CDY48302	Canola	plastid	23.15	20.61
CDX81826	Canola	plastid	20.49	20.07

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	GO:A0A078EJH0	EnsemblPlants:CDY00904	ProteinID:CDY00904
ProteinID:CDY00904.1	GO:GO:0000124	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139
GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046695
GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00110896001	InterPro:Histone-fold	InterPro:IPR009072	PFAM:PD012998	PFAM:PF03847
PANTHER:PTHR12264	SUPFAM:SSF47113	InterPro:TAF12	InterPro:TFIID_TAF12_dom	UniParc:UPI0004EBDE07	SEG:seg

Description

BnaC05g42960D

Coordinates

chrLK031923:-:44721..47527

Molecular Weight (calculated)

55712.8 Da

IEP (calculated)

10.359

GRAVY (calculated)

-0.809

Length

527 amino acids

Sequence
(BLAST)

001: MEQPRQTSTA SQPPETPSQP SEPAPKPAVL SQIQQPPSTN PNPSSAPSIP SSPSPPSPSL NPNPNPPQYT RPVTSPATQH LPQSLGRPPP PSYSRPWQPH
101: SSYAHFSSSA SSSPLLSSSS APASSSSSSS LPVAGQQRGG MAIGVPASPI PSPSPTPASA FPGSFGQQYG GLGRGTVGMS EASSNSSVTQ GRMMQGTQGM
201: GMMGTIGSGS QMRPSGMPQH QQRPAQSSLR PASSPSSPSP VPQNFQGHSL MRPSSIGSPG VQSTGAANQP WLSSSAQGKP PLAPPSYRPQ VNNPSMPQRS
301: HVPQQHLSTS PAASQPQQQQ QHQLQPQEQH QQLRSPHQPL PYSHQPPRVQ GSVNQKAASL AMPTQPPVPQ PGNQAKTVST ENEESDDRIL GKRSIHELLQ
401: QIDPSEKLDP EVEGILADIA EDFVESITTF GCSLAKHRKS DTLEAKDILL HVERNWNIRP PGFSSDEIKT FRKPVTTDIH KDRLAAVKKS MTVTEAANAR
501: FGHGTANARG GQAKTPANPL ASTTFNH

Best Arabidopsis Sequence Match ( AT3G10070.1 )
(BLAST)

001: MDQPRQSSTA SQPPETPPQP SDSKPSTLTQ IQPTPSTNPS PSSVVSSIPS SPAPQSPSLN PNPNPPQYTR PVTSPATQQQ QHLSQPLVRP PPQAYSRPWQ
101: QHSSYTHFSS ASSPLLSSSS APASSSSSLP ISGQQRGGMA IGVPASPIPS PSPTPSQHSP SAFPGSFGQQ YGGLGRGTVG MSEATSNTSS PQVRMMQGTQ
201: GIGMMGTLGS GSQIRPSGMT QHQQRPTQSS LRPASSTSTQ SPVAQNFQGH SLMRPSPISS PNVQSTGASQ QSLQAINQPW LSSTPQGKPP LPPPSYRPQV
301: NSPSMQQRPH IPQQHISTSA ATPQPQQQQS QQQHQPQEQL QQLRSPQQPL AHPHQPTRVQ GLVNQKVTSP VMPSQPPVAQ PGNHAKTVSA ETEPSDDRIL
401: GKRSIHELLQ QIDPSEKLDP EVEDILSDIA EDFVESITTF GCSLAKHRKS DILEAKDILL HVERNWNIRP PGFSSDEFKT FRKPLTTDIH KERLAAIKKS
501: VTATEAANAR NQFGHGTANA RGGQAKTPSN PMGSTTFNH

Arabidopsis Description

TAF12Transcription initiation factor TFIID subunit 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR71]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.