Factsheet for PGSC0003DMT400023148

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 5
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006601
PGSC0003DMT400009911
PGSC0003DMT400012398
PGSC0003DMT400029923
PGSC0003DMT400050569
PGSC0003DMT400055395
PGSC0003DMT400076353

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10070.1	PGSC0003DMT400076353	AT1G02680.1	17340043
AT3G10070.1	PGSC0003DMT400006601	AT1G17440.1	17340043
AT3G10070.1	PGSC0003DMT400012398	AT1G17440.1	17340043
AT3G10070.1	PGSC0003DMT400055395	AT1G27720.1	17340043
AT3G10070.1	PGSC0003DMT400029923	AT1G54140.1	17340043
AT3G10070.1	PGSC0003DMT400050569	AT4G20280.1	17340043
AT3G10070.1	PGSC0003DMT400009911	AT4G34340.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g009680.2.1	Tomato	nucleus, plastid	89.3	88.52
VIT_08s0007g03700.t01	Wine grape	nucleus	37.08	55.91
KRH30849	Soybean	nucleus, plastid	42.6	47.14
KRH32724	Soybean	nucleus, plastid	40.11	44.38
CDY00904	Canola	nucleus, plastid	40.29	42.88
Bra029816.1-P	Field mustard	nucleus, plastid	39.57	42.13
CDY60164	Canola	nucleus, plastid	39.57	42.13
AT3G10070.1	Thale cress	nucleus, plastid	40.46	42.12
Bra034092.1-P	Field mustard	plastid	19.07	39.78
Os01t0858500-01	Rice	plastid	21.21	39.53
GSMUA_Achr10P...	Banana	plastid	24.6	38.76
EES03919	Sorghum	nucleus, plastid	30.48	34.34
PGSC0003DMT400012398	Potato	nucleus	11.41	33.68
CDY41320	Canola	plastid	19.96	32.46
TraesCS3B01G403500.1	Wheat	nucleus	30.84	31.63
TraesCS3A01G371300.1	Wheat	nucleus, plastid	31.02	31.41
HORVU3Hr1G084430.4	Barley	plastid	30.48	31.38
TraesCS3D01G364400.1	Wheat	cytosol, plastid	30.3	31.08
Zm00001d042792_P002	Maize	nucleus, plastid	27.09	30.89
CDY22214	Canola	plastid	18.72	30.79
PGSC0003DMT400006601	Potato	nucleus, plastid	21.21	18.62

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:102578266	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	GO:GO:0000124	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046695	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072
UniProt:M1AHW1	PFAM:PD012998	PFAM:PF03847	EnsemblPlantsGene:PGSC0003DMG400008963	PGSC:PGSC0003DMG400008963	EnsemblPlants:PGSC0003DMT400023148
PANTHER:PTHR12264	SUPFAM:SSF47113	InterPro:TAF12	InterPro:TFIID_TAF12_dom	UniParc:UPI0002959727	RefSeq:XP_006341120.1
SEG:seg	:	:	:	:	:

Description

Tata-associated factor II 58 [Source:PGSC_GENE;Acc:PGSC0003DMG400008963]

Coordinates

chr9:-:2937043..2946288

Molecular Weight (calculated)

58992.4 Da

IEP (calculated)

10.795

GRAVY (calculated)

-0.584

Length

561 amino acids

Sequence
(BLAST)

001: MEQSQPPPTT PAPATPISQP AEQIPAASPA PPPPSSTAIS QLPSTTTTTS VVSQPVNLNP TTTTSATKTT VTTTITSGTK TITTTTISPG GTISAAAAAQ
101: QQNPSAATSQ NAQARQPFGR PWQQPSPFQH FSLPPPPPPP PPHSSSSSSS ISSSLVSMQN QNPRGGMAMG VPAHHPSSSF SSLTTPSYGQ QFGGLGRNLP
201: DSTPPTSTTS QVRQPIQGMH GMGMMGSLGS TSPMRPAGVS PQQLRPVSSS IRPQTSISSQ SAATQNFQGH SMLRVQSVGF PPSQSHTTSQ SPRTQTQPWL
301: SSGAPGKPPL PTPSLRPQIN PQSLHQRSHI LAPHQHTVTT TSSAQQSQSQ PSASSQSQDH LGQQMPPSRI QQSLSNQPLG RGQGLGIQRP SSHALMQPTA
401: VQPGPPSKAA TTLEMGDPCT RILSKRSIQE IVTQIDPSEK LDAEVEDILV DIAEEFVESI TTFGCSLAKH RKSNTLEAKD ILLHLERNWN MTLPGFGGDE
501: IRAYKKPLTS DIHKERIAVI KKSTLVAEMT NAKGPTQTGG NMKSHLAKSA ANILGSPNAK T

Best Arabidopsis Sequence Match ( AT1G17440.1 )
(BLAST)

001: MAEPIPSSSL SPKSLQSPNP MEPSPASSTP LPSSSSQQQQ LMTAPISNSV NSAASPAMTV TTTEGIVIQN NSQPNISSPN PTSSNPPIGA QIPSPSPLSH
101: PSSSLDQQTQ TQQLVQQTQQ LPQQQQQIMQ QISSSPIPQL SPQQQQILQQ QHMTSQQIPM SSYQIAQSLQ RSPSLSRLSQ IQQQQQQQHQ GQYGNVLRQQ
201: AGLYGTMNFG GSGSVQQSQQ NQQMVNPNMS RAGLVGQSGH LPMLNGAAGA AQMNIQPQLL AASPRQKSGM VQGSQFHPGS SGQQLQGMQA MGMMGSLNLT
301: SQMRGNPALY AQQRINPGQM RQQLSQQNAL TSPQVQNLQR TSSLAFMNPQ LSGLAQNGQA GMMQNSLSQQ QWLKQMSGIT SPNSFRLQPS QRQALLLQQQ
401: QQQQQQLSSP QLHQSSMSLN QQQISQIIQQ QQQQSQLGQS QMNQSHSQQQ LQQMQQQLQQ QPQQQMQQQQ QQQQQMQINQ QQPSPRMLSH AGQKSVSLTG
501: SQPEATQSGT TTPGGSSSQG TEATNQLLGK RKIQDLVSQV DVHAKLDPDV EDLLLEVADD FIDSVTSFAC SLAKHRKSSV LEPKDILLHL EKNLHLTIPG
601: FSSEDKRQTK TVPTDLHKKR LAMVRALLES SKPETNASNS KETMRQAMVN PNGPNHLLRP SQSSEQLVSQ TSGPHILQHM TRY

Arabidopsis Description

TAF12BTranscription initiation factor TFIID subunit 12b [Source:UniProtKB/Swiss-Prot;Acc:Q940A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.