Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g010570.2.1 | Tomato | nucleus | 80.0 | 98.82 |
| Solyc05g018120.1.1 | Tomato | nucleus | 98.57 | 98.57 |
| VIT_19s0093g00470.t01 | Wine grape | nucleus | 65.24 | 69.19 |
| GSMUA_Achr9P06160_001 | Banana | nucleus | 63.33 | 66.83 |
| Os01t0680400-01 | Rice | nucleus | 62.86 | 62.56 |
| EES01269 | Sorghum | nucleus | 61.9 | 62.2 |
| KRH64870 | Soybean | nucleus | 58.1 | 60.4 |
| TraesCS3D01G267500.1 | Wheat | nucleus | 61.9 | 60.19 |
| AT4G20280.1 | Thale cress | nucleus | 60.0 | 60.0 |
| TraesCS3A01G267300.1 | Wheat | nucleus | 61.43 | 59.72 |
| CDX78982 | Canola | nucleus | 57.62 | 59.61 |
| HORVU3Hr1G062710.1 | Barley | nucleus | 60.95 | 59.26 |
| Bra013452.1-P | Field mustard | nucleus | 57.14 | 59.11 |
| CDY67613 | Canola | nucleus | 56.19 | 51.53 |
| Zm00001d011605_P001 | Maize | nucleus | 61.43 | 47.08 |
| CDY31444 | Canola | nucleus | 34.76 | 45.62 |
| AT1G20000.1 | Thale cress | nucleus, plastid | 43.33 | 44.61 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:102604061 | MapMan:15.3.5.3.11 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006367 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046982 | InterPro:Histone-fold |
| InterPro:IPR009072 | UniProt:M1BQJ2 | PFAM:PF04719 | EnsemblPlantsGene:PGSC0003DMG400019653 | PGSC:PGSC0003DMG400019653 | EnsemblPlants:PGSC0003DMT400050569 |
| PANTHER:PTHR13218 | PANTHER:PTHR13218:SF14 | SUPFAM:SSF47113 | InterPro:TAFII28 | UniParc:UPI000295BBF4 | RefSeq:XP_006348624.1 |
| RefSeq:XP_006348625.1 | RefSeq:XP_006348626.1 | RefSeq:XP_015164781.1 | SEG:seg | : | : |
Description
TATA binding protein associated factor 24kDa subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400019653]
Coordinates
chr5:+:1177299..1184781
Molecular Weight (calculated)
23357.5 Da
IEP (calculated)
4.956
GRAVY (calculated)
-0.844
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRSKDPFEA TFEEQDDSPP ESPAGTDENE GQDQGAVGVN MNESDDVNTD SREKPSTSKA TSVSVSTAGP ISKPKEEDEE EEEESMDVQL GKLSSSSDPD
101: KLAKMQSILS QFTEEQMSRY ESFRRSGFQK SNMKRLLSNI TGSAKISIPM TIVVSGIAKM FVGELIETAK MVMAERKDTG PIRPCHIREA YRRLKLEGKI
201: PKKSVPRLFR
101: KLAKMQSILS QFTEEQMSRY ESFRRSGFQK SNMKRLLSNI TGSAKISIPM TIVVSGIAKM FVGELIETAK MVMAERKDTG PIRPCHIREA YRRLKLEGKI
201: PKKSVPRLFR
001: MKHSKDPFEA AIEEEQEESP PESPVGGGGG GDGSEDGRIE IDQTQDEDER PVDVRRPMKK AKTSVVVTEA KNKDKDEDDE EEEENMDVEL TKYPTSSDPA
101: KMAKMQTILS QFTEDQMSRY ESFRRSALQR PQMKKLLIGV TGSQKIGMPM IIVACGIAKM FVGELVETAR VVMAERKESG PIRPCHIRES YRRLKLEGKV
201: PKRSVPRLFR
101: KMAKMQTILS QFTEDQMSRY ESFRRSALQR PQMKKLLIGV TGSQKIGMPM IIVACGIAKM FVGELVETAR VVMAERKESG PIRPCHIRES YRRLKLEGKV
201: PKRSVPRLFR
Arabidopsis Description
TAF11Transcription initiation factor TFIID subunit 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9M565]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.