Factsheet for HORVU3Hr1G062710.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G024140.1
HORVU3Hr1G084430.4
HORVU3Hr1G085840.7
HORVU6Hr1G032840.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20280.1	HORVU1Hr1G024140.1	AT1G02680.1	17340043
AT4G20280.1	HORVU3Hr1G085840.7	AT1G17440.1	17340043
AT4G20280.1	HORVU6Hr1G032840.2	AT1G17440.1	17340043
AT4G20280.1	HORVU3Hr1G084430.4	AT3G10070.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G267300.1	Wheat	nucleus	95.83	95.83
TraesCS3D01G267500.1	Wheat	nucleus	94.44	94.44
Os01t0680400-01	Rice	nucleus	73.15	74.88
EES01269	Sorghum	nucleus	71.3	73.68
GSMUA_Achr9P06160_001	Banana	nucleus	60.19	65.33
Solyc05g010570.2.1	Tomato	nucleus	50.93	64.71
VIT_19s0093g00470.t01	Wine grape	nucleus	56.94	62.12
PGSC0003DMT400050569	Potato	nucleus	59.26	60.95
Solyc05g018120.1.1	Tomato	nucleus	59.26	60.95
KRH64870	Soybean	nucleus	56.48	60.4
CDX78982	Canola	nucleus	53.7	57.14
Bra013452.1-P	Field mustard	nucleus	53.24	56.65
AT4G20280.1	Thale cress	nucleus	52.31	53.81
Zm00001d011605_P001	Maize	nucleus	67.59	53.28
CDY67613	Canola	nucleus	52.31	49.34
CDY31444	Canola	nucleus	32.87	44.38
AT1G20000.1	Thale cress	nucleus, plastid	40.74	43.14

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.3.11	UniProt:A0A287LB10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006367
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046982	EnsemblPlantsGene:HORVU3Hr1G062710
EnsemblPlants:HORVU3Hr1G062710.1	InterPro:Histone-fold	InterPro:IPR009072	PFAM:PF04719	PANTHER:PTHR13218	PANTHER:PTHR13218:SF14
SUPFAM:SSF47113	InterPro:TAFII28	UniParc:UPI000B46B4DC	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr3H:-:479845073..479848007

Molecular Weight (calculated)

23597.9 Da

IEP (calculated)

5.478

GRAVY (calculated)

-0.769

Length

216 amino acids

Sequence
(BLAST)

001: MKDPFEAAVE EQESPPDSPA PPEEGPATAV PHTIDEDYDG SAGAGGSRPP PPRPRPSALA APSTSAAPAA AKAKVRPQKE QDDDDDEEDP MEVDLDKLPS
101: GTSDPDKLAK MNALLSQFTE DQMNRYESFR RSGFQKSNMK KLLASITGSQ KISMPTTIVV SGIAKMFVGE VIETARIIMS ERKDSGPIRP CHIREAYRRL
201: KLEGKIPKRS VPRLFR

Best Arabidopsis Sequence Match ( AT4G20280.1 )
(BLAST)

001: MKHSKDPFEA AIEEEQEESP PESPVGGGGG GDGSEDGRIE IDQTQDEDER PVDVRRPMKK AKTSVVVTEA KNKDKDEDDE EEEENMDVEL TKYPTSSDPA
101: KMAKMQTILS QFTEDQMSRY ESFRRSALQR PQMKKLLIGV TGSQKIGMPM IIVACGIAKM FVGELVETAR VVMAERKESG PIRPCHIRES YRRLKLEGKV
201: PKRSVPRLFR

Arabidopsis Description

TAF11Transcription initiation factor TFIID subunit 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9M565]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.