Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013452.1-P | Field mustard | nucleus | 99.51 | 99.51 |
| CDY67613 | Canola | nucleus | 97.04 | 86.03 |
| AT4G20280.1 | Thale cress | nucleus | 72.91 | 70.48 |
| VIT_19s0093g00470.t01 | Wine grape | nucleus | 61.58 | 63.13 |
| GSMUA_Achr9P06160_001 | Banana | nucleus | 61.58 | 62.81 |
| CDY31444 | Canola | nucleus | 47.29 | 60.0 |
| Solyc05g010570.2.1 | Tomato | nucleus | 50.25 | 60.0 |
| KRH64870 | Soybean | nucleus | 59.11 | 59.41 |
| Os01t0680400-01 | Rice | nucleus | 61.08 | 58.77 |
| PGSC0003DMT400050569 | Potato | nucleus | 59.61 | 57.62 |
| Solyc05g018120.1.1 | Tomato | nucleus | 59.61 | 57.62 |
| EES01269 | Sorghum | nucleus | 58.13 | 56.46 |
| TraesCS3A01G267300.1 | Wheat | nucleus | 58.62 | 55.09 |
| TraesCS3D01G267500.1 | Wheat | nucleus | 58.13 | 54.63 |
| HORVU3Hr1G062710.1 | Barley | nucleus | 57.14 | 53.7 |
| Zm00001d011605_P001 | Maize | nucleus | 57.14 | 42.34 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.5.3.11 | GO:A0A078CQJ8 | EnsemblPlants:CDX78982 | ProteinID:CDX78982 | ProteinID:CDX78982.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006367 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046982 | EnsemblPlantsGene:GSBRNA2T00131496001 | InterPro:Histone-fold | InterPro:IPR009072 |
| PFAM:PF04719 | PANTHER:PTHR13218 | PANTHER:PTHR13218:SF14 | SUPFAM:SSF47113 | InterPro:TAFII28 | UniParc:UPI0004EE9DDB |
| SEG:seg | : | : | : | : | : |
Description
BnaA01g10490D
Coordinates
chrLK031816:+:1186505..1187799
Molecular Weight (calculated)
23034.3 Da
IEP (calculated)
5.131
GRAVY (calculated)
-0.910
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MKHSKDPFEA AIEEEQEESP PESPAGGGDD EGRLEIEQTP EESERDVGVR RQPKKFKSSV AVAEGKNKDE DEEEEEENME AELTKYPTTA DPAKMAKMQV
101: ILSQFTEDQM SRYESFRRSA FQKGNMRKLL QGVTGSQKIS MPVIIVNCGI AKMFVGELVE TARVVMGERN DSGPIRPCHI RESYRRLKLE GKIPKRSVPR
201: LFR
101: ILSQFTEDQM SRYESFRRSA FQKGNMRKLL QGVTGSQKIS MPVIIVNCGI AKMFVGELVE TARVVMGERN DSGPIRPCHI RESYRRLKLE GKIPKRSVPR
201: LFR
001: MKHSKDPFEA AIEEEQEESP PESPVGGGGG GDGSEDGRIE IDQTQDEDER PVDVRRPMKK AKTSVVVTEA KNKDKDEDDE EEEENMDVEL TKYPTSSDPA
101: KMAKMQTILS QFTEDQMSRY ESFRRSALQR PQMKKLLIGV TGSQKIGMPM IIVACGIAKM FVGELVETAR VVMAERKESG PIRPCHIRES YRRLKLEGKV
201: PKRSVPRLFR
101: KMAKMQTILS QFTEDQMSRY ESFRRSALQR PQMKKLLIGV TGSQKIGMPM IIVACGIAKM FVGELVETAR VVMAERKESG PIRPCHIRES YRRLKLEGKV
201: PKRSVPRLFR
Arabidopsis Description
TAF11Transcription initiation factor TFIID subunit 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9M565]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.