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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • cytosol 1
  • mitochondrion 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc05g018120.1.1 Tomato nucleus 100.0 80.95
PGSC0003DMT400050569 Potato nucleus 98.82 80.0
VIT_19s0093g00470.t01 Wine grape nucleus 70.0 60.1
GSMUA_Achr9P06160_001 Banana nucleus 69.41 59.3
Os01t0680400-01 Rice nucleus 66.47 53.55
EES01269 Sorghum nucleus 65.29 53.11
KRH64870 Soybean nucleus 61.76 51.98
TraesCS3D01G267500.1 Wheat nucleus 65.29 51.39
TraesCS3A01G267300.1 Wheat nucleus 65.29 51.39
HORVU3Hr1G062710.1 Barley nucleus 64.71 50.93
AT4G20280.1 Thale cress nucleus 62.35 50.48
CDX78982 Canola nucleus 60.0 50.25
Bra013452.1-P Field mustard nucleus 59.41 49.75
CDY67613 Canola nucleus 58.24 43.23
Zm00001d011605_P001 Maize nucleus 64.71 40.15
AT1G20000.1 Thale cress nucleus, plastid 45.29 37.75
CDY31444 Canola nucleus 33.53 35.62
Protein Annotations
Gene3D:1.10.20.10MapMan:15.3.5.3.11GO:GO:0003674GO:GO:0003713GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005654GO:GO:0005669
GO:GO:0006139GO:GO:0006367GO:GO:0008134GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0016043GO:GO:0046982GO:GO:0051123GO:GO:1903506GO:GO:1903508
InterPro:Histone-foldInterPro:IPR009072UniProt:K4BXM9PFAM:PF04719PANTHER:PTHR13218PANTHER:PTHR13218:SF14
SUPFAM:SSF47113EnsemblPlantsGene:Solyc05g010570.2EnsemblPlants:Solyc05g010570.2.1InterPro:TAFII28UniParc:UPI0002767026SEG:seg
Description
No Description!
Coordinates
chr5:-:4774041..4780427
Molecular Weight (calculated)
19048.9 Da
IEP (calculated)
9.493
GRAVY (calculated)
-0.694
Length
170 amino acids
Sequence
(BLAST)
001: MNEGDDVNTD SREKPSTSKA TSVSVSTAGP ISKPKEEDEE EEEESMDVQL GKLSSSSDPD KLAKMQSILS QFTEEQMSRY ESFRRSGFQK SNMKRLLTNI
101: TGSAKISIPM TIVVSGIAKM FVGELIETAK MVMAERKDTG PIRPCHIREA YRRLKLEGKI PKKSVPRLFR
Best Arabidopsis Sequence Match ( AT4G20280.1 )
(BLAST)
001: MKHSKDPFEA AIEEEQEESP PESPVGGGGG GDGSEDGRIE IDQTQDEDER PVDVRRPMKK AKTSVVVTEA KNKDKDEDDE EEEENMDVEL TKYPTSSDPA
101: KMAKMQTILS QFTEDQMSRY ESFRRSALQR PQMKKLLIGV TGSQKIGMPM IIVACGIAKM FVGELVETAR VVMAERKESG PIRPCHIRES YRRLKLEGKV
201: PKRSVPRLFR
Arabidopsis Description
TAF11Transcription initiation factor TFIID subunit 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9M565]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.