Factsheet for GSMUA_Achr9P06160_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr7P10670_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20280.1	GSMUA_AchrUn_...	AT1G02680.1	17340043
AT4G20280.1	GSMUA_Achr7P10670_001	AT1G17440.1	17340043
AT4G20280.1	GSMUA_Achr10P...	AT3G10070.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0093g00470.t01	Wine grape	nucleus	69.35	69.7
Solyc05g010570.2.1	Tomato	nucleus	59.3	69.41
KRH64870	Soybean	nucleus	66.83	65.84
EES01269	Sorghum	nucleus	67.84	64.59
Os01t0680400-01	Rice	nucleus	67.84	63.98
Solyc05g018120.1.1	Tomato	nucleus	67.34	63.81
PGSC0003DMT400050569	Potato	nucleus	66.83	63.33
CDX78982	Canola	nucleus	62.81	61.58
TraesCS3A01G267300.1	Wheat	nucleus	66.33	61.11
Bra013452.1-P	Field mustard	nucleus	62.31	61.08
TraesCS3D01G267500.1	Wheat	nucleus	65.83	60.65
HORVU3Hr1G062710.1	Barley	nucleus	65.33	60.19
AT4G20280.1	Thale cress	nucleus	59.3	56.19
CDY67613	Canola	nucleus	60.8	52.84
CDY31444	Canola	nucleus	39.2	48.75
Zm00001d011605_P001	Maize	nucleus	65.83	47.81
AT1G20000.1	Thale cress	nucleus, plastid	47.24	46.08

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.3.11	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006367	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046982	EnsemblPlantsGene:GSMUA_Achr9G06160_001	EnsemblPlants:GSMUA_Achr9P06160_001
EnsemblPlants:GSMUA_Achr9T06160_001	InterPro:Histone-fold	InterPro:IPR009072	UniProt:M0TXX5	PFAM:PF04719	PANTHER:PTHR13218
PANTHER:PTHR13218:SF14	SUPFAM:SSF47113	InterPro:TAFII28	UniParc:UPI00029536BD	SEG:seg	:

Description

transcription initiation factor TFIID subunit 11, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G06160_001]

Coordinates

chr9:-:3954890..3958768

Molecular Weight (calculated)

21861.9 Da

IEP (calculated)

4.566

GRAVY (calculated)

-0.700

Length

199 amino acids

Sequence
(BLAST)

001: MKDPFEAAVE EQESPPESPI PPEEDAVAVA DAVDGDEEEA DARSQPPASA PPGAPAAGGG GKGKEEDEEE EEENMDVEFG KLPSGGDPDK MVKMQAILSQ
101: FTEEQMSRYE SFRRSGFQKA NMRRLLTSIT GSQKISIPMT IVVSGIAKMF VGELIETGKI VMTERKESGP IRPCHIREAY RRLKLEGKIP KRSVPRLFR

Best Arabidopsis Sequence Match ( AT4G20280.1 )
(BLAST)

001: MKHSKDPFEA AIEEEQEESP PESPVGGGGG GDGSEDGRIE IDQTQDEDER PVDVRRPMKK AKTSVVVTEA KNKDKDEDDE EEEENMDVEL TKYPTSSDPA
101: KMAKMQTILS QFTEDQMSRY ESFRRSALQR PQMKKLLIGV TGSQKIGMPM IIVACGIAKM FVGELVETAR VVMAERKESG PIRPCHIRES YRRLKLEGKV
201: PKRSVPRLFR

Arabidopsis Description

TAF11Transcription initiation factor TFIID subunit 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9M565]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.