Factsheet for Zm00001d011605_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012396_P003
Zm00001d040757_P002
Zm00001d040759_P002
Zm00001d042792_P002
Zm00001d042879_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20280.1	Zm00001d040757_P002	AT1G02680.1	17340043
AT4G20280.1	Zm00001d040759_P002	AT1G02680.1	17340043
AT4G20280.1	Zm00001d012396_P003	AT1G17440.1	17340043
AT4G20280.1	Zm00001d042879_P002	AT1G17440.1	17340043
AT4G20280.1	Zm00001d042792_P002	AT3G10070.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01269	Sorghum	nucleus	62.04	81.34
TraesCS3D01G267500.1	Wheat	nucleus	54.38	68.98
Os01t0680400-01	Rice	nucleus	52.92	68.72
TraesCS3A01G267300.1	Wheat	nucleus	54.01	68.52
HORVU3Hr1G062710.1	Barley	nucleus	53.28	67.59
GSMUA_Achr9P06160_001	Banana	nucleus	47.81	65.83
Solyc05g010570.2.1	Tomato	nucleus	40.15	64.71
VIT_19s0093g00470.t01	Wine grape	nucleus	44.89	62.12
PGSC0003DMT400050569	Potato	nucleus	47.08	61.43
Solyc05g018120.1.1	Tomato	nucleus	47.08	61.43
CDX78982	Canola	nucleus	42.34	57.14
KRH64870	Soybean	nucleus	41.97	56.93
Bra013452.1-P	Field mustard	nucleus	41.97	56.65
AT4G20280.1	Thale cress	nucleus	40.88	53.33
CDY67613	Canola	nucleus	41.61	49.78
AT1G20000.1	Thale cress	nucleus, plastid	32.48	43.63
CDY31444	Canola	nucleus	24.82	42.5

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.3.11	UniProt:A0A1D6G245	ProteinID:AQK97474.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006367	GO:GO:0006412	GO:GO:0006413
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	PFAM:PF04719	PANTHER:PTHR13218	PANTHER:PTHR13218:SF14
SUPFAM:SSF47113	InterPro:TAFII28	UniParc:UPI00084330A0	EnsemblPlantsGene:Zm00001d011605	EnsemblPlants:Zm00001d011605_P001	EnsemblPlants:Zm00001d011605_T001
SEG:seg	:	:	:	:	:

Description

Transcription initiation factor TFIID subunit 11%2C mRNA

Coordinates

chr8:+:155682044..155685357

Molecular Weight (calculated)

30991.0 Da

IEP (calculated)

6.527

GRAVY (calculated)

-0.476

Length

274 amino acids

Sequence
(BLAST)

001: MKDPFEADVE EQDSPPESPA PPEDEPGAAG PAEDPEDYDG GPPPRQPSAP ASHAAGAKAK ARVHREQQED DDEDEDQIEV DLEKLPSSTG DPDKLAKMKF
101: VLEYAFAILS QFTQQQMNRY ESFRRSGFQK SNMKRLHSLH LTLVGLLASI TGSQKISIPT SIVVSGIAKI FVGELIETGK FRIVVLFTLF LWNRICYSVA
201: EFLPFVSVWN QRPIFFFPPH YVTRNLLAEQ TLARVVMSER KDSGPIRPCH IREAYRRLKL EGKIPRRSVP RLFR

Best Arabidopsis Sequence Match ( AT4G20280.1 )
(BLAST)

001: MKHSKDPFEA AIEEEQEESP PESPVGGGGG GDGSEDGRIE IDQTQDEDER PVDVRRPMKK AKTSVVVTEA KNKDKDEDDE EEEENMDVEL TKYPTSSDPA
101: KMAKMQTILS QFTEDQMSRY ESFRRSALQR PQMKKLLIGV TGSQKIGMPM IIVACGIAKM FVGELVETAR VVMAERKESG PIRPCHIRES YRRLKLEGKV
201: PKRSVPRLFR

Arabidopsis Description

TAF11Transcription initiation factor TFIID subunit 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9M565]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.