CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00711
EES03919
KXG33694

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20280.1	EES00711	AT1G02680.1	17340043
AT4G20280.1	KXG33694	AT1G17440.1	17340043
AT4G20280.1	EES03919	AT3G10070.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0680400-01	Rice	nucleus	76.56	75.83
TraesCS3D01G267500.1	Wheat	nucleus	74.16	71.76
TraesCS3A01G267300.1	Wheat	nucleus	73.68	71.3
HORVU3Hr1G062710.1	Barley	nucleus	73.68	71.3
GSMUA_Achr9P06160_001	Banana	nucleus	64.59	67.84
Solyc05g010570.2.1	Tomato	nucleus	53.11	65.29
VIT_19s0093g00470.t01	Wine grape	nucleus	61.24	64.65
Zm00001d011605_P001	Maize	nucleus	81.34	62.04
Solyc05g018120.1.1	Tomato	nucleus	62.2	61.9
PGSC0003DMT400050569	Potato	nucleus	62.2	61.9
KRH64870	Soybean	nucleus	56.94	58.91
CDX78982	Canola	nucleus	56.46	58.13
Bra013452.1-P	Field mustard	nucleus	55.98	57.64
AT4G20280.1	Thale cress	nucleus	55.02	54.76
CDY67613	Canola	nucleus	55.5	50.66
AT1G20000.1	Thale cress	nucleus, plastid	42.58	43.63
CDY31444	Canola	nucleus	32.54	42.5

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.3.11	EntrezGene:8068019	UniProt:C5XGR0	EnsemblPlants:EES01269	ProteinID:EES01269
ProteinID:EES01269.1	GO:GO:0003674	GO:GO:0003713	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139
GO:GO:0006367	GO:GO:0008134	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0046982	GO:GO:0051123	GO:GO:1903506	GO:GO:1903508	InterPro:Histone-fold
InterPro:IPR009072	PFAM:PF04719	PANTHER:PTHR13218	PANTHER:PTHR13218:SF14	EnsemblPlantsGene:SORBI_3003G257600	SUPFAM:SSF47113
InterPro:TAFII28	UniParc:UPI0001A8465C	RefSeq:XP_002456149.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:59576605..59579040

Molecular Weight (calculated)

22987.1 Da

IEP (calculated)

5.061

GRAVY (calculated)

-0.811

Length

209 amino acids

Sequence
(BLAST)

001: MKDPFEAAVE EQDSPPESPA PAEEEPGAAG PADDPEDYDG GGPRGLAPRQ PSAPASHAAA AAAKAKGRVQ REQQEDDDDE EDQMEVDLEK LPSSTGDPDK
101: LAKMNAILSQ FTEQQMNRYE SFRRSGFQKS NMKRLLVGIT GSQKISIPTS IVVSGIAKMF VGELIETARV VMTERKDSGP IRPCHIREAY RRLKLEGKIP
201: RRSVPRLFR

Best Arabidopsis Sequence Match ( AT4G20280.1 )
(BLAST)

001: MKHSKDPFEA AIEEEQEESP PESPVGGGGG GDGSEDGRIE IDQTQDEDER PVDVRRPMKK AKTSVVVTEA KNKDKDEDDE EEEENMDVEL TKYPTSSDPA
101: KMAKMQTILS QFTEDQMSRY ESFRRSALQR PQMKKLLIGV TGSQKIGMPM IIVACGIAKM FVGELVETAR VVMAERKESG PIRPCHIRES YRRLKLEGKV
201: PKRSVPRLFR

Arabidopsis Description

TAF11Transcription initiation factor TFIID subunit 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9M565]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.