Factsheet for VIT_19s0093g00470.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0005g01230.t01
VIT_08s0007g03700.t01
VIT_09s0002g01420.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20280.1	VIT_07s0005g01230.t01	AT1G02680.1	17340043
AT4G20280.1	VIT_09s0002g01420.t01	AT1G17440.1	17340043
AT4G20280.1	VIT_08s0007g03700.t01	AT3G10070.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g010570.2.1	Tomato	nucleus	60.1	70.0
GSMUA_Achr9P06160_001	Banana	nucleus	69.7	69.35
KRH64870	Soybean	nucleus	70.2	68.81
Solyc05g018120.1.1	Tomato	nucleus	69.19	65.24
PGSC0003DMT400050569	Potato	nucleus	69.19	65.24
AT4G20280.1	Thale cress	nucleus	68.18	64.29
Bra013452.1-P	Field mustard	nucleus	63.64	62.07
CDX78982	Canola	nucleus	63.13	61.58
EES01269	Sorghum	nucleus	64.65	61.24
Os01t0680400-01	Rice	nucleus	63.64	59.72
TraesCS3D01G267500.1	Wheat	nucleus	63.13	57.87
TraesCS3A01G267300.1	Wheat	nucleus	62.63	57.41
HORVU3Hr1G062710.1	Barley	nucleus	62.12	56.94
CDY67613	Canola	nucleus	62.12	53.71
CDY31444	Canola	nucleus	41.92	51.88
AT1G20000.1	Thale cress	nucleus, plastid	49.49	48.04
Zm00001d011605_P001	Maize	nucleus	62.12	44.89

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100249829	wikigene:100249829	MapMan:15.3.5.3.11	ProteinID:CBI32917	ProteinID:CBI32917.3
UniProt:D7TQZ4	EMBL:FN596009	GO:GO:0003674	GO:GO:0003713	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669
GO:GO:0006139	GO:GO:0006367	GO:GO:0008134	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0046982	GO:GO:0051123	GO:GO:1903506	GO:GO:1903508
InterPro:Histone-fold	InterPro:IPR009072	EntrezGene:LOC100249829	wikigene:LOC100249829	PFAM:PF04719	PANTHER:PTHR13218
PANTHER:PTHR13218:SF14	SUPFAM:SSF47113	InterPro:TAFII28	UniParc:UPI00015CCD95	ArrayExpress:VIT_19s0093g00470	EnsemblPlantsGene:VIT_19s0093g00470
EnsemblPlants:VIT_19s0093g00470.t01	unigene:Vvi.879	RefSeq:XP_002277017	RefSeq:XP_002277017.1	SEG:seg	:

Description

No Description!

Coordinates

chr19:+:17427963..17439872

Molecular Weight (calculated)

22031.2 Da

IEP (calculated)

5.215

GRAVY (calculated)

-0.697

Length

198 amino acids

Sequence
(BLAST)

001: MKQSKDPFEV AFEESSPPDS PVEEIVGGQI EDEDDANVNV HPTSTPSAAP SSGTTVPPTA KSKDEDEEEE EENMDVELGK LPTSGDPHKM AKMQAILSQF
101: TEEQMSRYES FRRSGFQKAN MKKLLVSITG SQKISAPMTI VASGIAKMFV GELVETARMV MTERKETGPI RPCHIREAYR RLKLEGKVPR RSVSRLFR

Best Arabidopsis Sequence Match ( AT4G20280.1 )
(BLAST)

001: MKHSKDPFEA AIEEEQEESP PESPVGGGGG GDGSEDGRIE IDQTQDEDER PVDVRRPMKK AKTSVVVTEA KNKDKDEDDE EEEENMDVEL TKYPTSSDPA
101: KMAKMQTILS QFTEDQMSRY ESFRRSALQR PQMKKLLIGV TGSQKIGMPM IIVACGIAKM FVGELVETAR VVMAERKESG PIRPCHIRES YRRLKLEGKV
201: PKRSVPRLFR

Arabidopsis Description

TAF11Transcription initiation factor TFIID subunit 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9M565]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.