Factsheet for VIT_08s0007g03700.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g05780.t01
VIT_07s0005g01230.t01
VIT_08s0040g01420.t01
VIT_09s0002g01160.t01
VIT_09s0002g01420.t01
VIT_12s0028g03940.t01
VIT_18s0001g09310.t01
VIT_19s0093g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10070.1	VIT_07s0005g01230.t01	AT1G02680.1	17340043
AT3G10070.1	VIT_09s0002g01420.t01	AT1G17440.1	17340043
AT3G10070.1	VIT_18s0001g09310.t01	AT1G27720.1	17340043
AT3G10070.1	VIT_12s0028g03940.t01	AT1G32750.1	17340043
AT3G10070.1	VIT_09s0002g01160.t01	AT1G54140.1	17340043
AT3G10070.1	VIT_19s0093g00470.t01	AT4G20280.1	17340043
AT3G10070.1	VIT_08s0040g01420.t01	AT4G34340.1	17340043
AT3G10070.1	VIT_04s0008g05780.t01	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034092.1-P	Field mustard	plastid	31.99	44.24
GSMUA_Achr10P...	Banana	plastid	40.86	42.7
Os01t0858500-01	Rice	plastid	34.14	42.19
KRH30849	Soybean	nucleus, plastid	56.18	41.22
KRH32724	Soybean	nucleus, plastid	53.49	39.25
CDY00904	Canola	nucleus, plastid	55.38	39.09
Bra029816.1-P	Field mustard	nucleus, plastid	54.03	38.14
CDY60164	Canola	nucleus, plastid	54.03	38.14
PGSC0003DMT400023148	Potato	nucleus, plastid	55.91	37.08
Solyc09g009680.2.1	Tomato	nucleus, plastid	55.91	36.75
AT3G10070.1	Thale cress	nucleus, plastid	52.42	36.18
CDY41320	Canola	plastid	31.45	33.91
CDY22214	Canola	plastid	29.84	32.55
TraesCS3B01G403500.1	Wheat	nucleus	41.67	28.34
TraesCS3D01G364400.1	Wheat	cytosol, plastid	40.59	27.61
HORVU3Hr1G084430.4	Barley	plastid	40.32	27.52
EES03919	Sorghum	nucleus, plastid	36.83	27.51
TraesCS3A01G371300.1	Wheat	nucleus, plastid	40.32	27.08
Zm00001d042792_P002	Maize	nucleus, plastid	35.22	26.63
VIT_09s0002g01420.t01	Wine grape	nucleus, plastid	29.84	18.91

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100242486	wikigene:100242486	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	ProteinID:CBI30264
ProteinID:CBI30264.3	UniProt:D7TJ38	EMBL:FN595991	GO:GO:0000124	GO:GO:0001102	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669
GO:GO:0006139	GO:GO:0006352	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0017025	GO:GO:0019538	GO:GO:0043966
GO:GO:0046695	GO:GO:0046982	GO:GO:0051123	InterPro:Histone-fold	InterPro:IPR009072	EntrezGene:LOC100242486
wikigene:LOC100242486	PFAM:PD012998	PFAM:PF03847	PANTHER:PTHR12264	SUPFAM:SSF47113	InterPro:TAF12
InterPro:TFIID_TAF12_dom	UniParc:UPI0001BE38E0	ArrayExpress:VIT_08s0007g03700	EnsemblPlantsGene:VIT_08s0007g03700	EnsemblPlants:VIT_08s0007g03700.t01	unigene:Vvi.21985
RefSeq:XP_002277150	RefSeq:XP_002277150.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:-:17631403..17646375

Molecular Weight (calculated)

40066.2 Da

IEP (calculated)

10.739

GRAVY (calculated)

-0.799

Length

372 amino acids

Sequence
(BLAST)

001: MCPNRLPTPT RPRPSIQGSQ GMGMMGTLGS GSQMRPGGIS AHHQQRPVQS SLRPQSTVNN QSPATQNFQG HGLLRASSVG SPGAPSPNTS QSMQPHNQPW
101: LSSGSQGKPP LPSPSFRPQM TAQSLPQRSH IPQQHHHPLP TASQQQQMST AQQPQQPLLS HQQQEHYGQQ FPPSRVPQSL PHPQQIGRVQ GSGNQKPSSL
201: AIVQPSTPQL GPHSRTASAE ASESGNRILS KRSIHELVNQ IDPSEKLDPE VEDILVDIAE DFVESITTFG CSLAKHRKSP TLEAKDILLH LERNWNMTLP
301: GFGGDEIKTF KKPFVSDIHK ERLAAIKKSA VGTESANTKS SSGQGAGNTK GHPAKTSANV LSSPNLKIRE AA

Best Arabidopsis Sequence Match ( AT3G10070.1 )
(BLAST)

001: MDQPRQSSTA SQPPETPPQP SDSKPSTLTQ IQPTPSTNPS PSSVVSSIPS SPAPQSPSLN PNPNPPQYTR PVTSPATQQQ QHLSQPLVRP PPQAYSRPWQ
101: QHSSYTHFSS ASSPLLSSSS APASSSSSLP ISGQQRGGMA IGVPASPIPS PSPTPSQHSP SAFPGSFGQQ YGGLGRGTVG MSEATSNTSS PQVRMMQGTQ
201: GIGMMGTLGS GSQIRPSGMT QHQQRPTQSS LRPASSTSTQ SPVAQNFQGH SLMRPSPISS PNVQSTGASQ QSLQAINQPW LSSTPQGKPP LPPPSYRPQV
301: NSPSMQQRPH IPQQHISTSA ATPQPQQQQS QQQHQPQEQL QQLRSPQQPL AHPHQPTRVQ GLVNQKVTSP VMPSQPPVAQ PGNHAKTVSA ETEPSDDRIL
401: GKRSIHELLQ QIDPSEKLDP EVEDILSDIA EDFVESITTF GCSLAKHRKS DILEAKDILL HVERNWNIRP PGFSSDEFKT FRKPLTTDIH KERLAAIKKS
501: VTATEAANAR NQFGHGTANA RGGQAKTPSN PMGSTTFNH

Arabidopsis Description

TAF12Transcription initiation factor TFIID subunit 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR71]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.