Factsheet for AT3G10070.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029816.1-P	Field mustard	nucleus, plastid	74.58	76.28
CDY60164	Canola	nucleus, plastid	74.21	75.9
CDY00904	Canola	nucleus, plastid	73.65	75.33
Bra034092.1-P	Field mustard	plastid	30.43	60.97
CDY41320	Canola	plastid	33.58	52.46
VIT_08s0007g03700.t01	Wine grape	nucleus	36.18	52.42
CDY22214	Canola	plastid	27.83	43.99
KRH30849	Soybean	nucleus, plastid	40.45	43.0
KRH32724	Soybean	nucleus, plastid	39.89	42.41
PGSC0003DMT400023148	Potato	nucleus, plastid	42.12	40.46
Os01t0858500-01	Rice	plastid	22.26	39.87
Solyc09g009680.2.1	Tomato	nucleus, plastid	41.74	39.75
GSMUA_Achr10P...	Banana	plastid	25.05	37.92
Zm00001d042792_P002	Maize	nucleus, plastid	31.35	34.35
HORVU3Hr1G084430.4	Barley	plastid	34.14	33.76
EES03919	Sorghum	nucleus, plastid	30.61	33.13
TraesCS3B01G403500.1	Wheat	nucleus	32.65	32.18
TraesCS3D01G364400.1	Wheat	cytosol, plastid	32.65	32.18
TraesCS3A01G371300.1	Wheat	nucleus, plastid	32.47	31.59
AT1G17440.1	Thale cress	plastid	24.3	19.18

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	EntrezGene:820168	ProteinID:AAF04417.1	ProteinID:AEE74856.1
EMBL:AF344878	EMBL:AK221690	ArrayExpress:AT3G10070	EnsemblPlantsGene:AT3G10070	RefSeq:AT3G10070	TAIR:AT3G10070
RefSeq:AT3G10070-TAIR-G	EnsemblPlants:AT3G10070.1	TAIR:AT3G10070.1	EMBL:AY463613	Unigene:At.23399	GO:GO:0000124
GO:GO:0001102	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004402
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006351	GO:GO:0006352	GO:GO:0006355
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016740	GO:GO:0017025	GO:GO:0019538	GO:GO:0043966	GO:GO:0046695	GO:GO:0046982
GO:GO:0051123	InterPro:Histone-fold	InterPro:IPR009072	RefSeq:NP_566367.1	PFAM:PD012998	PFAM:PF03847
PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009049	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PRINTS:PR01217	PANTHER:PTHR12264
UniProt:Q9SR71	SUPFAM:SSF47113	InterPro:TAF12	Symbol:TAF12	InterPro:TFIID_TAF12_dom	UniParc:UPI00000A2B2D
SEG:seg	:	:	:	:	:

Description

TAF12Transcription initiation factor TFIID subunit 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR71]

Coordinates

chr3:-:3103880..3106826

Molecular Weight (calculated)

57713.1 Da

IEP (calculated)

10.424

GRAVY (calculated)

-0.842

Length

539 amino acids

Sequence
(BLAST)

001: MDQPRQSSTA SQPPETPPQP SDSKPSTLTQ IQPTPSTNPS PSSVVSSIPS SPAPQSPSLN PNPNPPQYTR PVTSPATQQQ QHLSQPLVRP PPQAYSRPWQ
101: QHSSYTHFSS ASSPLLSSSS APASSSSSLP ISGQQRGGMA IGVPASPIPS PSPTPSQHSP SAFPGSFGQQ YGGLGRGTVG MSEATSNTSS PQVRMMQGTQ
201: GIGMMGTLGS GSQIRPSGMT QHQQRPTQSS LRPASSTSTQ SPVAQNFQGH SLMRPSPISS PNVQSTGASQ QSLQAINQPW LSSTPQGKPP LPPPSYRPQV
301: NSPSMQQRPH IPQQHISTSA ATPQPQQQQS QQQHQPQEQL QQLRSPQQPL AHPHQPTRVQ GLVNQKVTSP VMPSQPPVAQ PGNHAKTVSA ETEPSDDRIL
401: GKRSIHELLQ QIDPSEKLDP EVEDILSDIA EDFVESITTF GCSLAKHRKS DILEAKDILL HVERNWNIRP PGFSSDEFKT FRKPLTTDIH KERLAAIKKS
501: VTATEAANAR NQFGHGTANA RGGQAKTPSN PMGSTTFNH

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.