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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 3
  • plastid 5
  • peroxisome 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra025975.1-P Field mustard plastid 64.42 68.01
CDY48302 Canola plastid 57.54 66.39
CDY26245 Canola plastid 60.91 63.9
CDX81826 Canola plastid 44.07 55.95
CDY21749 Canola plastid 45.83 55.89
Bra030989.1-P Field mustard plastid 49.34 55.34
PGSC0003DMT400012398 Potato nucleus 15.37 55.26
VIT_09s0002g01420.t01 Wine grape nucleus, plastid 45.97 53.49
Solyc06g062900.2.1 Tomato nucleus 18.01 51.25
KRH06174 Soybean nucleus, plastid 25.04 49.0
KRH47589 Soybean nucleus, plastid 41.58 47.41
Solyc03g122020.2.1 Tomato nucleus, plastid 43.63 46.42
PGSC0003DMT400006601 Potato nucleus, plastid 42.61 45.54
GSMUA_Achr7P10670_001 Banana plastid 38.07 40.44
Zm00001d042879_P002 Maize plastid 26.65 38.4
Zm00001d012396_P003 Maize nucleus, plastid 29.14 36.12
Os01t0846900-01 Rice nucleus 27.96 35.24
TraesCS3D01G356600.1 Wheat nucleus, plastid 27.96 35.24
TraesCS3A01G362900.1 Wheat nucleus, plastid 28.11 35.23
KXG33694 Sorghum nucleus, plastid 28.55 35.2
TraesCS3B01G395300.2 Wheat nucleus, plastid 27.53 34.88
HORVU3Hr1G085840.7 Barley cytosol, mitochondrion, nucleus 28.84 34.5
TraesCS6D01G151600.1 Wheat nucleus, plastid 20.35 33.25
HORVU6Hr1G032840.2 Barley nucleus, plastid 19.03 31.03
TraesCS6B01G190100.1 Wheat nucleus, plastid 15.67 25.6
TraesCS6A01G161300.1 Wheat nucleus, plastid 15.52 25.24
AT3G10070.1 Thale cress nucleus, plastid 19.18 24.3
Protein Annotations
Gene3D:1.10.20.10MapMan:15.3.4.3.5MapMan:15.3.5.3.12EntrezGene:838316ProteinID:AAF97312.1ProteinID:AEE29587.1
ProteinID:AEE29588.1ArrayExpress:AT1G17440EnsemblPlantsGene:AT1G17440RefSeq:AT1G17440TAIR:AT1G17440RefSeq:AT1G17440-TAIR-G
EnsemblPlants:AT1G17440.1TAIR:AT1G17440.1EMBL:AY056144EMBL:AY091423EMBL:AY463614Unigene:At.22899
Symbol:EER4GO:GO:0000124GO:GO:0001102GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0003723GO:GO:0003743GO:GO:0003824GO:GO:0004402GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005654GO:GO:0005669
GO:GO:0006139GO:GO:0006351GO:GO:0006352GO:GO:0006355GO:GO:0006412GO:GO:0006413
GO:GO:0006464GO:GO:0007154GO:GO:0007165GO:GO:0008135GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009719GO:GO:0009736GO:GO:0009867GO:GO:0009987GO:GO:0010104
GO:GO:0016043GO:GO:0016740GO:GO:0017025GO:GO:0019538GO:GO:0043966GO:GO:0046695
GO:GO:0046982GO:GO:0051123InterPro:Histone-foldInterPro:IPR009072RefSeq:NP_564023.1RefSeq:NP_849680.1
PFAM:PD012998PFAM:PF03847PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293
PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064
PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611
PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010
PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046
PO:PO:0009047PO:PO:0009049PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025195PO:PO:0025281PANTHER:PTHR12264PANTHER:PTHR12264:SF3
UniProt:Q940A7SUPFAM:SSF47113InterPro:TAF12InterPro:TFIID_TAF12_domUniParc:UPI00000A13B9SEG:seg
Description
TAF12BTranscription initiation factor TFIID subunit 12b [Source:UniProtKB/Swiss-Prot;Acc:Q940A7]
Coordinates
chr1:-:5983984..5987934
Molecular Weight (calculated)
74810.3 Da
IEP (calculated)
10.463
GRAVY (calculated)
-0.809
Length
683 amino acids
Sequence
(BLAST)
001: MAEPIPSSSL SPKSLQSPNP MEPSPASSTP LPSSSSQQQQ LMTAPISNSV NSAASPAMTV TTTEGIVIQN NSQPNISSPN PTSSNPPIGA QIPSPSPLSH
101: PSSSLDQQTQ TQQLVQQTQQ LPQQQQQIMQ QISSSPIPQL SPQQQQILQQ QHMTSQQIPM SSYQIAQSLQ RSPSLSRLSQ IQQQQQQQHQ GQYGNVLRQQ
201: AGLYGTMNFG GSGSVQQSQQ NQQMVNPNMS RAGLVGQSGH LPMLNGAAGA AQMNIQPQLL AASPRQKSGM VQGSQFHPGS SGQQLQGMQA MGMMGSLNLT
301: SQMRGNPALY AQQRINPGQM RQQLSQQNAL TSPQVQNLQR TSSLAFMNPQ LSGLAQNGQA GMMQNSLSQQ QWLKQMSGIT SPNSFRLQPS QRQALLLQQQ
401: QQQQQQLSSP QLHQSSMSLN QQQISQIIQQ QQQQSQLGQS QMNQSHSQQQ LQQMQQQLQQ QPQQQMQQQQ QQQQQMQINQ QQPSPRMLSH AGQKSVSLTG
501: SQPEATQSGT TTPGGSSSQG TEATNQLLGK RKIQDLVSQV DVHAKLDPDV EDLLLEVADD FIDSVTSFAC SLAKHRKSSV LEPKDILLHL EKNLHLTIPG
601: FSSEDKRQTK TVPTDLHKKR LAMVRALLES SKPETNASNS KETMRQAMVN PNGPNHLLRP SQSSEQLVSQ TSGPHILQHM TRY
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.