Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 5
- peroxisome 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra025975.1-P | Field mustard | plastid | 64.42 | 68.01 |
CDY48302 | Canola | plastid | 57.54 | 66.39 |
CDY26245 | Canola | plastid | 60.91 | 63.9 |
CDX81826 | Canola | plastid | 44.07 | 55.95 |
CDY21749 | Canola | plastid | 45.83 | 55.89 |
Bra030989.1-P | Field mustard | plastid | 49.34 | 55.34 |
PGSC0003DMT400012398 | Potato | nucleus | 15.37 | 55.26 |
VIT_09s0002g01420.t01 | Wine grape | nucleus, plastid | 45.97 | 53.49 |
Solyc06g062900.2.1 | Tomato | nucleus | 18.01 | 51.25 |
KRH06174 | Soybean | nucleus, plastid | 25.04 | 49.0 |
KRH47589 | Soybean | nucleus, plastid | 41.58 | 47.41 |
Solyc03g122020.2.1 | Tomato | nucleus, plastid | 43.63 | 46.42 |
PGSC0003DMT400006601 | Potato | nucleus, plastid | 42.61 | 45.54 |
GSMUA_Achr7P10670_001 | Banana | plastid | 38.07 | 40.44 |
Zm00001d042879_P002 | Maize | plastid | 26.65 | 38.4 |
Zm00001d012396_P003 | Maize | nucleus, plastid | 29.14 | 36.12 |
Os01t0846900-01 | Rice | nucleus | 27.96 | 35.24 |
TraesCS3D01G356600.1 | Wheat | nucleus, plastid | 27.96 | 35.24 |
TraesCS3A01G362900.1 | Wheat | nucleus, plastid | 28.11 | 35.23 |
KXG33694 | Sorghum | nucleus, plastid | 28.55 | 35.2 |
TraesCS3B01G395300.2 | Wheat | nucleus, plastid | 27.53 | 34.88 |
HORVU3Hr1G085840.7 | Barley | cytosol, mitochondrion, nucleus | 28.84 | 34.5 |
TraesCS6D01G151600.1 | Wheat | nucleus, plastid | 20.35 | 33.25 |
HORVU6Hr1G032840.2 | Barley | nucleus, plastid | 19.03 | 31.03 |
TraesCS6B01G190100.1 | Wheat | nucleus, plastid | 15.67 | 25.6 |
TraesCS6A01G161300.1 | Wheat | nucleus, plastid | 15.52 | 25.24 |
AT3G10070.1 | Thale cress | nucleus, plastid | 19.18 | 24.3 |
Protein Annotations
Gene3D:1.10.20.10 | MapMan:15.3.4.3.5 | MapMan:15.3.5.3.12 | EntrezGene:838316 | ProteinID:AAF97312.1 | ProteinID:AEE29587.1 |
ProteinID:AEE29588.1 | ArrayExpress:AT1G17440 | EnsemblPlantsGene:AT1G17440 | RefSeq:AT1G17440 | TAIR:AT1G17440 | RefSeq:AT1G17440-TAIR-G |
EnsemblPlants:AT1G17440.1 | TAIR:AT1G17440.1 | EMBL:AY056144 | EMBL:AY091423 | EMBL:AY463614 | Unigene:At.22899 |
Symbol:EER4 | GO:GO:0000124 | GO:GO:0001102 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
GO:GO:0003723 | GO:GO:0003743 | GO:GO:0003824 | GO:GO:0004402 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005669 |
GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006352 | GO:GO:0006355 | GO:GO:0006412 | GO:GO:0006413 |
GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009736 | GO:GO:0009867 | GO:GO:0009987 | GO:GO:0010104 |
GO:GO:0016043 | GO:GO:0016740 | GO:GO:0017025 | GO:GO:0019538 | GO:GO:0043966 | GO:GO:0046695 |
GO:GO:0046982 | GO:GO:0051123 | InterPro:Histone-fold | InterPro:IPR009072 | RefSeq:NP_564023.1 | RefSeq:NP_849680.1 |
PFAM:PD012998 | PFAM:PF03847 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
PO:PO:0009047 | PO:PO:0009049 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR12264 | PANTHER:PTHR12264:SF3 |
UniProt:Q940A7 | SUPFAM:SSF47113 | InterPro:TAF12 | InterPro:TFIID_TAF12_dom | UniParc:UPI00000A13B9 | SEG:seg |
Description
TAF12BTranscription initiation factor TFIID subunit 12b [Source:UniProtKB/Swiss-Prot;Acc:Q940A7]
Coordinates
chr1:-:5983984..5987934
Molecular Weight (calculated)
74810.3 Da
IEP (calculated)
10.463
GRAVY (calculated)
-0.809
Length
683 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEPIPSSSL SPKSLQSPNP MEPSPASSTP LPSSSSQQQQ LMTAPISNSV NSAASPAMTV TTTEGIVIQN NSQPNISSPN PTSSNPPIGA QIPSPSPLSH
101: PSSSLDQQTQ TQQLVQQTQQ LPQQQQQIMQ QISSSPIPQL SPQQQQILQQ QHMTSQQIPM SSYQIAQSLQ RSPSLSRLSQ IQQQQQQQHQ GQYGNVLRQQ
201: AGLYGTMNFG GSGSVQQSQQ NQQMVNPNMS RAGLVGQSGH LPMLNGAAGA AQMNIQPQLL AASPRQKSGM VQGSQFHPGS SGQQLQGMQA MGMMGSLNLT
301: SQMRGNPALY AQQRINPGQM RQQLSQQNAL TSPQVQNLQR TSSLAFMNPQ LSGLAQNGQA GMMQNSLSQQ QWLKQMSGIT SPNSFRLQPS QRQALLLQQQ
401: QQQQQQLSSP QLHQSSMSLN QQQISQIIQQ QQQQSQLGQS QMNQSHSQQQ LQQMQQQLQQ QPQQQMQQQQ QQQQQMQINQ QQPSPRMLSH AGQKSVSLTG
501: SQPEATQSGT TTPGGSSSQG TEATNQLLGK RKIQDLVSQV DVHAKLDPDV EDLLLEVADD FIDSVTSFAC SLAKHRKSSV LEPKDILLHL EKNLHLTIPG
601: FSSEDKRQTK TVPTDLHKKR LAMVRALLES SKPETNASNS KETMRQAMVN PNGPNHLLRP SQSSEQLVSQ TSGPHILQHM TRY
101: PSSSLDQQTQ TQQLVQQTQQ LPQQQQQIMQ QISSSPIPQL SPQQQQILQQ QHMTSQQIPM SSYQIAQSLQ RSPSLSRLSQ IQQQQQQQHQ GQYGNVLRQQ
201: AGLYGTMNFG GSGSVQQSQQ NQQMVNPNMS RAGLVGQSGH LPMLNGAAGA AQMNIQPQLL AASPRQKSGM VQGSQFHPGS SGQQLQGMQA MGMMGSLNLT
301: SQMRGNPALY AQQRINPGQM RQQLSQQNAL TSPQVQNLQR TSSLAFMNPQ LSGLAQNGQA GMMQNSLSQQ QWLKQMSGIT SPNSFRLQPS QRQALLLQQQ
401: QQQQQQLSSP QLHQSSMSLN QQQISQIIQQ QQQQSQLGQS QMNQSHSQQQ LQQMQQQLQQ QPQQQMQQQQ QQQQQMQINQ QQPSPRMLSH AGQKSVSLTG
501: SQPEATQSGT TTPGGSSSQG TEATNQLLGK RKIQDLVSQV DVHAKLDPDV EDLLLEVADD FIDSVTSFAC SLAKHRKSSV LEPKDILLHL EKNLHLTIPG
601: FSSEDKRQTK TVPTDLHKKR LAMVRALLES SKPETNASNS KETMRQAMVN PNGPNHLLRP SQSSEQLVSQ TSGPHILQHM TRY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.