Factsheet for HORVU3Hr1G085840.7

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

mitochondrion 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G022460.1
HORVU1Hr1G024140.1
HORVU3Hr1G062710.1
HORVU3Hr1G084430.4
HORVU3Hr1G085840.7
HORVU4Hr1G034590.13
HORVU5Hr1G054500.18
HORVU6Hr1G032840.2
HORVU6Hr1G062340.1
HORVU7Hr1G006990.9
HORVU7Hr1G113760.2
HORVU7Hr1G115120.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17440.1	HORVU1Hr1G024140.1	AT1G02680.1	17340043
AT1G17440.1	HORVU3Hr1G085840.7	AT1G17440.1	17340043
AT1G17440.1	HORVU6Hr1G032840.2	AT1G17440.1	17340043
AT1G17440.1	HORVU4Hr1G034590.13	AT1G27720.1	17340043
AT1G17440.1	HORVU6Hr1G062340.1	AT1G27720.1	17340043
AT1G17440.1	HORVU7Hr1G115120.1	AT1G32750.1	17340043
AT1G17440.1	HORVU5Hr1G054500.18	AT1G50300.1	17340043
AT1G17440.1	HORVU3Hr1G084430.4	AT3G10070.1	17340043
AT1G17440.1	HORVU3Hr1G062710.1	AT4G20280.1	17340043
AT1G17440.1	HORVU7Hr1G006990.9	AT4G34340.1	17340043
AT1G17440.1	HORVU0Hr1G022460.1	AT5G25150.1	17340043
AT1G17440.1	HORVU7Hr1G113760.2	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G362900.1	Wheat	nucleus, plastid	91.59	95.96
TraesCS3D01G356600.1	Wheat	nucleus, plastid	90.02	94.83
TraesCS3B01G395300.2	Wheat	nucleus, plastid	88.97	94.25
Os01t0846900-01	Rice	nucleus	70.4	74.17
Zm00001d042879_P002	Maize	plastid	59.89	72.15
KXG33694	Sorghum	nucleus, plastid	67.43	69.49
Zm00001d012396_P003	Maize	nucleus, plastid	61.65	63.88
HORVU6Hr1G032840.2	Barley	nucleus, plastid	38.53	52.51
PGSC0003DMT400012398	Potato	nucleus	13.49	40.53
Solyc06g062900.2.1	Tomato	nucleus	16.64	39.58
KRH06174	Soybean	nucleus, plastid	23.12	37.82
GSMUA_Achr7P10670_001	Banana	plastid	38.88	34.53
Solyc03g122020.2.1	Tomato	nucleus, plastid	36.08	32.09
KRH47589	Soybean	nucleus, plastid	33.63	32.05
VIT_09s0002g01420.t01	Wine grape	nucleus, plastid	32.92	32.03
CDY48302	Canola	plastid	33.1	31.93
PGSC0003DMT400006601	Potato	nucleus, plastid	34.5	30.83
Bra025975.1-P	Field mustard	plastid	34.33	30.29
CDX81826	Canola	plastid	28.37	30.11
CDY26245	Canola	plastid	34.15	29.95
CDY21749	Canola	plastid	28.37	28.93
AT1G17440.1	Thale cress	plastid	34.5	28.84
Bra030989.1-P	Field mustard	plastid	28.37	26.6
HORVU3Hr1G084430.4	Barley	plastid	23.47	24.59

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	UniProt:A0A287M2B2	GO:GO:0000124	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046695	GO:GO:0046982	EnsemblPlantsGene:HORVU3Hr1G085840	EnsemblPlants:HORVU3Hr1G085840.7
InterPro:Histone-fold	InterPro:IPR009072	PFAM:PD012998	PFAM:PF03847	PANTHER:PTHR12264	PANTHER:PTHR12264:SF3
SUPFAM:SSF47113	InterPro:TAF12	InterPro:TFIID_TAF12_dom	UniParc:UPI000B479478	SEG:seg	:

Description

No Description!

Coordinates

chrchr3H:+:614560045..614565199

Molecular Weight (calculated)

60501.8 Da

IEP (calculated)

10.588

GRAVY (calculated)

-0.602

Length

571 amino acids

Sequence
(BLAST)

001: DRPPRIVSGH RRPRKPYTPP AMADPPSVAA IASPQPDQLG GSAPIPQNSN PTPLLSPQIP PSPTVSDLSV ISSPQLDPAA AAAGGGSADF PPRPQQLQAP
101: SPTQAVPGAG GYGQIQRSGS ASRLAAASQL PQYSAATARM YGGQMSFSGG GAQLGQQQQQ QLAARAAMLG QGQLGMMQGQ GNAASAAHYG LQSQMMAQPR
201: QKGMVQGAQF NTANAAQALQ GMQGMQSMGV MGTLGMNQMR PNGTIPYAQQ RFAQAQMRPQ QASQQAALSP QKGVAQGLSR TASITGLNSQ LPGVSQNGQM
301: MQMSSSQQQQ QQWLKHMQSS LASPSQHQIQ QQQRMLLMQQ LQKTGLTPHQ IAQAQQQHPH LNAQQLLQQQ HIMQQLQQQQ QQQQQSPRMS ASGSQKSANL
401: TGSQPGTPLS CGTMAGGSGS QGAEGTNQLL GKRKIQDLVA QVDPLGKLDP EVEDLVLEIA DDFIESVTAF ACTLAKHRKS SVLEAKDVLL HLQRNWHLTV
501: PGFSKEDKNP QRNYVKAAVD SQQPECDAAG VRSATNKLVA NNSIGNHQTR GPVADPSQTP TVGPLSKVPR F

Best Arabidopsis Sequence Match ( AT1G17440.1 )
(BLAST)

001: MAEPIPSSSL SPKSLQSPNP MEPSPASSTP LPSSSSQQQQ LMTAPISNSV NSAASPAMTV TTTEGIVIQN NSQPNISSPN PTSSNPPIGA QIPSPSPLSH
101: PSSSLDQQTQ TQQLVQQTQQ LPQQQQQIMQ QISSSPIPQL SPQQQQILQQ QHMTSQQIPM SSYQIAQSLQ RSPSLSRLSQ IQQQQQQQHQ GQYGNVLRQQ
201: AGLYGTMNFG GSGSVQQSQQ NQQMVNPNMS RAGLVGQSGH LPMLNGAAGA AQMNIQPQLL AASPRQKSGM VQGSQFHPGS SGQQLQGMQA MGMMGSLNLT
301: SQMRGNPALY AQQRINPGQM RQQLSQQNAL TSPQVQNLQR TSSLAFMNPQ LSGLAQNGQA GMMQNSLSQQ QWLKQMSGIT SPNSFRLQPS QRQALLLQQQ
401: QQQQQQLSSP QLHQSSMSLN QQQISQIIQQ QQQQSQLGQS QMNQSHSQQQ LQQMQQQLQQ QPQQQMQQQQ QQQQQMQINQ QQPSPRMLSH AGQKSVSLTG
501: SQPEATQSGT TTPGGSSSQG TEATNQLLGK RKIQDLVSQV DVHAKLDPDV EDLLLEVADD FIDSVTSFAC SLAKHRKSSV LEPKDILLHL EKNLHLTIPG
601: FSSEDKRQTK TVPTDLHKKR LAMVRALLES SKPETNASNS KETMRQAMVN PNGPNHLLRP SQSSEQLVSQ TSGPHILQHM TRY

Arabidopsis Description

TAF12BTranscription initiation factor TFIID subunit 12b [Source:UniProtKB/Swiss-Prot;Acc:Q940A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.