Factsheet for Bra025975.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 5
peroxisome 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra011521.1-P
Bra013452.1-P
Bra014245.1-P
Bra018839.1-P
Bra020485.1-P
Bra025069.1-P
Bra025975.1-P
Bra029816.1-P
Bra030061.1-P
Bra030508.1-P
Bra030989.1-P
Bra033338.1-P
Bra034092.1-P
Bra035499.1-P
Bra036534.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17440.1	Bra030508.1-P	AT1G02680.1	17340043
AT1G17440.1	Bra033338.1-P	AT1G02680.1	17340043
AT1G17440.1	Bra025975.1-P	AT1G17440.1	17340043
AT1G17440.1	Bra030989.1-P	AT1G17440.1	17340043
AT1G17440.1	Bra030061.1-P	AT1G27720.1	17340043
AT1G17440.1	Bra035499.1-P	AT1G32750.1	17340043
AT1G17440.1	Bra014245.1-P	AT1G50300.1	17340043
AT1G17440.1	Bra018839.1-P	AT1G50300.1	17340043
AT1G17440.1	Bra029816.1-P	AT3G10070.1	17340043
AT1G17440.1	Bra034092.1-P	AT3G10070.1	17340043
AT1G17440.1	Bra013452.1-P	AT4G20280.1	17340043
AT1G17440.1	Bra011521.1-P	AT4G34340.1	17340043
AT1G17440.1	Bra020485.1-P	AT5G25150.1	17340043
AT1G17440.1	Bra036534.1-P	AT5G25150.1	17340043
AT1G17440.1	Bra025069.1-P	AT5G45600.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26245	Canola	plastid	84.08	83.56
AT1G17440.1	Thale cress	plastid	68.01	64.42
Bra030989.1-P	Field mustard	plastid	53.32	56.65
PGSC0003DMT400012398	Potato	nucleus	16.38	55.79
Solyc06g062900.2.1	Tomato	nucleus	19.01	51.25
VIT_09s0002g01420.t01	Wine grape	nucleus, plastid	45.29	49.91
KRH06174	Soybean	nucleus, plastid	26.74	49.57
KRH47589	Soybean	nucleus, plastid	43.89	47.41
Solyc03g122020.2.1	Tomato	nucleus, plastid	45.29	45.64
PGSC0003DMT400006601	Potato	nucleus, plastid	43.43	43.98
GSMUA_Achr7P10670_001	Banana	plastid	40.19	40.44
Zm00001d042879_P002	Maize	plastid	27.67	37.76
TraesCS3D01G356600.1	Wheat	nucleus, plastid	29.98	35.79
TraesCS3A01G362900.1	Wheat	nucleus, plastid	29.83	35.41
Zm00001d012396_P003	Maize	nucleus, plastid	30.14	35.39
TraesCS3B01G395300.2	Wheat	nucleus, plastid	29.21	35.06
Os01t0846900-01	Rice	nucleus	29.37	35.06
HORVU3Hr1G085840.7	Barley	cytosol, mitochondrion, nucleus	30.29	34.33
KXG33694	Sorghum	nucleus, plastid	29.37	34.3
TraesCS6D01G151600.1	Wheat	nucleus, plastid	21.02	32.54
HORVU6Hr1G032840.2	Barley	nucleus, plastid	20.09	31.03
TraesCS6B01G190100.1	Wheat	nucleus, plastid	16.38	25.36
TraesCS6A01G161300.1	Wheat	nucleus, plastid	16.38	25.24
Bra029816.1-P	Field mustard	nucleus, plastid	20.4	25.05
Bra034092.1-P	Field mustard	plastid	9.43	22.68

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	EnsemblPlantsGene:Bra025975	EnsemblPlants:Bra025975.1	EnsemblPlants:Bra025975.1-P
GO:GO:0000124	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139	GO:GO:0006352
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046695	GO:GO:0046982
InterPro:Histone-fold	InterPro:IPR009072	UniProt:M4EB16	PFAM:PD012998	PFAM:PF03847	PANTHER:PTHR12264
PANTHER:PTHR12264:SF3	SUPFAM:SSF47113	InterPro:TAF12	InterPro:TFIID_TAF12_dom	UniParc:UPI000253F300	SEG:seg

Description

AT1G17440 (E=8e-080) EER4, TAF12B | EER4 (ENHANCED ETHYLENE RESPONSE 4); DNA binding / transcription initiation factor

Coordinates

chrA06:-:6688449..6691398

Molecular Weight (calculated)

70641.4 Da

IEP (calculated)

10.373

GRAVY (calculated)

-0.837

Length

647 amino acids

Sequence
(BLAST)

001: MAEAIPSSSL SPKSLQSPNP MEPSPASSAP PPSSSQQQQQ HMTPPISNSA ASPAMAAVTN TEGAIQNNIS NPQPNPAAGA QIPSPSPLDQ QAQTQQQQLG
101: GQTQQIMQQI SSSSIPQLSQ QQQQQILQQQ QQHMSPQQQI PMSNYHIAQS LQRSPSVSRL NQIQQQQQQG QYGNVLRQQA GMYGTMNFGG SGSVQQQNQQ
201: MGNPNLSRAG LVGQSGHLPM LNGAAGAAAQ MNIQSQLLAA SPRQKPGMVQ GTQFHPGSSG QQLQGIQGMG MMNSLNLSSQ MRGNPALYAQ QQRINPAQMR
301: QQLSQQNALT SPQVQNLQRT PSSLAFMNSQ LPGLAQNGQA GMMAQQQWLK QMSGITSPNS QSFRLQQSQR QQALLLQQQM PSAQLHQNSM SLNQQQIQML
401: HQQQQQQQSQ MGQAQMSQSH QQQQMQQPQQ QMQMQQQQQM SVNQQQPSPR MTSHAAQKSV SLTGSQPDVT QSGTTTPGGS SSQGTEATNQ LLGKRKIQDL
501: VSQVDAHAKL DPDVEDLLLE VADDFIDSVT SFACSLAKHR KSSILEPKDI LLHLEKNLNL TIPGFSSEDK HQTKNAPTDL HKKRLAMVRA LMESSKSETN
601: ASNSKETNRQ MMVNPNGQNH LLRPSPSSEQ LVSQTSGPHM LQHMTRY

Best Arabidopsis Sequence Match ( AT1G17440.1 )
(BLAST)

001: MAEPIPSSSL SPKSLQSPNP MEPSPASSTP LPSSSSQQQQ LMTAPISNSV NSAASPAMTV TTTEGIVIQN NSQPNISSPN PTSSNPPIGA QIPSPSPLSH
101: PSSSLDQQTQ TQQLVQQTQQ LPQQQQQIMQ QISSSPIPQL SPQQQQILQQ QHMTSQQIPM SSYQIAQSLQ RSPSLSRLSQ IQQQQQQQHQ GQYGNVLRQQ
201: AGLYGTMNFG GSGSVQQSQQ NQQMVNPNMS RAGLVGQSGH LPMLNGAAGA AQMNIQPQLL AASPRQKSGM VQGSQFHPGS SGQQLQGMQA MGMMGSLNLT
301: SQMRGNPALY AQQRINPGQM RQQLSQQNAL TSPQVQNLQR TSSLAFMNPQ LSGLAQNGQA GMMQNSLSQQ QWLKQMSGIT SPNSFRLQPS QRQALLLQQQ
401: QQQQQQLSSP QLHQSSMSLN QQQISQIIQQ QQQQSQLGQS QMNQSHSQQQ LQQMQQQLQQ QPQQQMQQQQ QQQQQMQINQ QQPSPRMLSH AGQKSVSLTG
501: SQPEATQSGT TTPGGSSSQG TEATNQLLGK RKIQDLVSQV DVHAKLDPDV EDLLLEVADD FIDSVTSFAC SLAKHRKSSV LEPKDILLHL EKNLHLTIPG
601: FSSEDKRQTK TVPTDLHKKR LAMVRALLES SKPETNASNS KETMRQAMVN PNGPNHLLRP SQSSEQLVSQ TSGPHILQHM TRY

Arabidopsis Description

TAF12BTranscription initiation factor TFIID subunit 12b [Source:UniProtKB/Swiss-Prot;Acc:Q940A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.