Factsheet for Os01t0846900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0338100-00
Os01t0680400-01
Os01t0846900-01
Os01t0858500-01
Os02t0654400-01
Os03t0441000-01
Os03t0603300-01
Os06t0645700-01
Os06t0645800-01
Os06t0645901-00
Os07t0205200-02
Os07t0296200-01
Os09t0299500-01
Os12t0574800-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17440.1	Os01t0338100-00	AT1G02680.1	17340043
AT1G17440.1	Os01t0846900-01	AT1G17440.1	17340043
AT1G17440.1	Os02t0654400-01	AT1G27720.1	17340043
AT1G17440.1	Os03t0441000-01	AT1G27720.1	17340043
AT1G17440.1	Os06t0645700-01	AT1G32750.1	17340043
AT1G17440.1	Os06t0645800-01	AT1G32750.1	17340043
AT1G17440.1	Os06t0645901-00	AT1G32750.1	17340043
AT1G17440.1	Os07t0296200-01	AT1G50300.1	17340043
AT1G17440.1	Os09t0299500-01	AT1G50300.1	17340043
AT1G17440.1	Os01t0858500-01	AT3G10070.1	17340043
AT1G17440.1	Os01t0680400-01	AT4G20280.1	17340043
AT1G17440.1	Os03t0603300-01	AT4G34340.1	17340043
AT1G17440.1	Os12t0574800-02	AT4G34340.1	17340043
AT1G17440.1	Os07t0205200-02	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042879_P002	Maize	plastid	64.39	73.63
TraesCS3D01G356600.1	Wheat	nucleus, plastid	73.62	73.62
KXG33694	Sorghum	nucleus, plastid	75.09	73.47
TraesCS3A01G362900.1	Wheat	nucleus, plastid	73.8	73.39
TraesCS3B01G395300.2	Wheat	nucleus, plastid	71.77	72.17
HORVU3Hr1G085840.7	Barley	cytosol, mitochondrion, nucleus	74.17	70.4
Zm00001d012396_P003	Maize	nucleus, plastid	68.08	66.97
TraesCS6D01G151600.1	Wheat	nucleus, plastid	41.7	54.07
HORVU6Hr1G032840.2	Barley	nucleus, plastid	41.33	53.46
TraesCS6B01G190100.1	Wheat	nucleus, plastid	35.42	45.93
PGSC0003DMT400012398	Potato	nucleus	15.31	43.68
TraesCS6A01G161300.1	Wheat	nucleus, plastid	33.58	43.33
Solyc06g062900.2.1	Tomato	nucleus	18.08	40.83
KRH06174	Soybean	nucleus, plastid	24.17	37.54
GSMUA_Achr7P10670_001	Banana	plastid	39.85	33.59
Os01t0858500-01	Rice	plastid	17.71	31.89
Solyc03g122020.2.1	Tomato	nucleus, plastid	37.27	31.46
VIT_09s0002g01420.t01	Wine grape	nucleus, plastid	33.95	31.35
CDY48302	Canola	plastid	33.58	30.74
PGSC0003DMT400006601	Potato	nucleus, plastid	36.16	30.67
CDX81826	Canola	plastid	29.89	30.11
KRH47589	Soybean	nucleus, plastid	33.21	30.05
CDY26245	Canola	plastid	35.61	29.65
Bra025975.1-P	Field mustard	plastid	35.06	29.37
CDY21749	Canola	plastid	29.34	28.39
AT1G17440.1	Thale cress	plastid	35.24	27.96
Bra030989.1-P	Field mustard	plastid	29.15	25.94

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	ProteinID:BAD81832.1	ProteinID:BAD82661.1	ProteinID:BAF06707.1
ProteinID:BAS75209.1	GO:GO:0000124	GO:GO:0001102	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003723	GO:GO:0003743	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669
GO:GO:0006139	GO:GO:0006352	GO:GO:0006412	GO:GO:0006413	GO:GO:0006464	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740
GO:GO:0017025	GO:GO:0019538	GO:GO:0043966	GO:GO:0046695	GO:GO:0046982	GO:GO:0051123
InterPro:Histone-fold	InterPro:IPR009072	EnsemblPlantsGene:Os01g0846900	EnsemblPlants:Os01t0846900-01	PFAM:PD012998	PFAM:PF03847
PANTHER:PTHR12264	PANTHER:PTHR12264:SF3	UniProt:Q5N796	SUPFAM:SSF47113	InterPro:TAF12	InterPro:TFIID_TAF12_dom
UniParc:UPI000049E8C4	SEG:seg	:	:	:	:

Description

Histone-fold domain containing protein. (Os01t0846900-01)

Coordinates

chr1:-:36385625..36390411

Molecular Weight (calculated)

57186.8 Da

IEP (calculated)

10.220

GRAVY (calculated)

-0.531

Length

542 amino acids

Sequence
(BLAST)

001: MADPPSAAAT ASPQPDQLAA AAVSTPQNPN PNPLLSPQIP PSPTVSDLSA ISSPQLDPSA AGGGAMDYPP RPPQMQAPSP GQAAAGAGGF GQIHRSGSGS
101: RLAAVGQLPQ YAAAAARMYG SQVNFSGGGG QVGQQQQQQQ QLAARAAMLS QGQIGMLQGQ GNAASAAHYG LQSQMMAQPR QKGMVQGAQF NTANAAQALQ
201: GMQSMGVMGG MRGNGTIPYN QQRFAHAQAQ LRPQQTSQQG TLSPQVVGQG LTRTASIAAL NPQLPGSSTN GPMAQMSLPQ KQQQAAWLKQ MQSSLGSPVS
301: PQQFQHQQRM LLIHQLQQQS GLNQHQIAQT QQQHPHLNTQ LLQQQHILQQ LQQQQQSPRI SASGSQKSMN LTGSQPGTPL SGGTMTGGSA SQGAEVTNQL
401: LGKRKIQDLV SQVDPLGKVD PEVEDLLLEI ADDFIDSVTA FACTLAKHRK SSVLEAKDVL LHLEKNWHLS VPGFLREDKN PQRHPVKVSV DPQQPECDAA
501: GIRSTGNKLV INNSVANHQT RPPVTEPSPM PTMGPLSKVP RF

Best Arabidopsis Sequence Match ( AT1G17440.1 )
(BLAST)

001: MAEPIPSSSL SPKSLQSPNP MEPSPASSTP LPSSSSQQQQ LMTAPISNSV NSAASPAMTV TTTEGIVIQN NSQPNISSPN PTSSNPPIGA QIPSPSPLSH
101: PSSSLDQQTQ TQQLVQQTQQ LPQQQQQIMQ QISSSPIPQL SPQQQQILQQ QHMTSQQIPM SSYQIAQSLQ RSPSLSRLSQ IQQQQQQQHQ GQYGNVLRQQ
201: AGLYGTMNFG GSGSVQQSQQ NQQMVNPNMS RAGLVGQSGH LPMLNGAAGA AQMNIQPQLL AASPRQKSGM VQGSQFHPGS SGQQLQGMQA MGMMGSLNLT
301: SQMRGNPALY AQQRINPGQM RQQLSQQNAL TSPQVQNLQR TSSLAFMNPQ LSGLAQNGQA GMMQNSLSQQ QWLKQMSGIT SPNSFRLQPS QRQALLLQQQ
401: QQQQQQLSSP QLHQSSMSLN QQQISQIIQQ QQQQSQLGQS QMNQSHSQQQ LQQMQQQLQQ QPQQQMQQQQ QQQQQMQINQ QQPSPRMLSH AGQKSVSLTG
501: SQPEATQSGT TTPGGSSSQG TEATNQLLGK RKIQDLVSQV DVHAKLDPDV EDLLLEVADD FIDSVTSFAC SLAKHRKSSV LEPKDILLHL EKNLHLTIPG
601: FSSEDKRQTK TVPTDLHKKR LAMVRALLES SKPETNASNS KETMRQAMVN PNGPNHLLRP SQSSEQLVSQ TSGPHILQHM TRY

Arabidopsis Description

TAF12BTranscription initiation factor TFIID subunit 12b [Source:UniProtKB/Swiss-Prot;Acc:Q940A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.