Factsheet for Solyc03g122020.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g078300.2.1
Solyc03g122020.2.1
Solyc04g077290.1.1
Solyc04g078050.2.1
Solyc05g010570.2.1
Solyc05g018120.1.1
Solyc06g036200.1.1
Solyc06g062900.2.1
Solyc06g065700.2.1
Solyc07g006820.2.1
Solyc09g008150.1.1
Solyc09g009680.2.1
Solyc11g040050.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17440.1	Solyc02g078300.2.1	AT1G02680.1	17340043
AT1G17440.1	Solyc06g036200.1.1	AT1G02680.1	17340043
AT1G17440.1	Solyc03g122020.2.1	AT1G17440.1	17340043
AT1G17440.1	Solyc06g062900.2.1	AT1G17440.1	17340043
AT1G17440.1	Solyc04g078050.2.1	AT1G27720.1	17340043
AT1G17440.1	Solyc07g006820.2.1	AT1G32750.1	17340043
AT1G17440.1	Solyc11g040050.1.1	AT1G50300.1	17340043
AT1G17440.1	Solyc09g009680.2.1	AT3G10070.1	17340043
AT1G17440.1	Solyc05g010570.2.1	AT4G20280.1	17340043
AT1G17440.1	Solyc05g018120.1.1	AT4G20280.1	17340043
AT1G17440.1	Solyc09g008150.1.1	AT4G34340.1	17340043
AT1G17440.1	Solyc06g065700.2.1	AT5G25150.1	17340043
AT1G17440.1	Solyc04g077290.1.1	AT5G45600.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006601	Potato	nucleus, plastid	82.87	83.26
Solyc06g062900.2.1	Tomato	nucleus	22.12	59.17
KRH06174	Soybean	nucleus, plastid	29.44	54.15
VIT_09s0002g01420.t01	Wine grape	nucleus, plastid	49.38	54.0
KRH47589	Soybean	nucleus, plastid	46.26	49.58
CDY48302	Canola	plastid	42.99	46.62
Bra025975.1-P	Field mustard	plastid	45.64	45.29
CDY26245	Canola	plastid	44.86	44.24
AT1G17440.1	Thale cress	plastid	46.42	43.63
CDY21749	Canola	plastid	34.58	39.64
CDX81826	Canola	plastid	33.18	39.59
GSMUA_Achr7P10670_001	Banana	plastid	39.25	39.19
Zm00001d042879_P002	Maize	plastid	28.5	38.61
Bra030989.1-P	Field mustard	plastid	36.29	38.26
TraesCS3D01G356600.1	Wheat	nucleus, plastid	31.78	37.64
TraesCS3A01G362900.1	Wheat	nucleus, plastid	31.93	37.61
Os01t0846900-01	Rice	nucleus	31.46	37.27
TraesCS3B01G395300.2	Wheat	nucleus, plastid	31.15	37.11
HORVU3Hr1G085840.7	Barley	cytosol, mitochondrion, nucleus	32.09	36.08
Zm00001d012396_P003	Maize	nucleus, plastid	30.69	35.75
KXG33694	Sorghum	nucleus, plastid	30.37	35.2
TraesCS6D01G151600.1	Wheat	nucleus, plastid	21.5	33.01
HORVU6Hr1G032840.2	Barley	nucleus, plastid	20.87	31.98
TraesCS6A01G161300.1	Wheat	nucleus, plastid	16.51	25.24
TraesCS6B01G190100.1	Wheat	nucleus, plastid	16.2	24.88
Solyc09g009680.2.1	Tomato	nucleus, plastid	19.16	21.73

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.4.3.5	MapMan:15.3.5.3.12	ncoils:Coil	GO:GO:0000124	GO:GO:0001102
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004402	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005669	GO:GO:0006139	GO:GO:0006352	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0017025	GO:GO:0019538
GO:GO:0043966	GO:GO:0046695	GO:GO:0046982	GO:GO:0051123	InterPro:Histone-fold	InterPro:IPR009072
UniProt:K4BN00	PFAM:PD012998	PFAM:PF03847	PANTHER:PTHR12264	PANTHER:PTHR12264:SF3	SUPFAM:SSF47113
EnsemblPlantsGene:Solyc03g122020.2	EnsemblPlants:Solyc03g122020.2.1	InterPro:TAF12	InterPro:TFIID_TAF12_dom	UniParc:UPI00027657C9	SEG:seg

Description

No Description!

Coordinates

chr3:+:70013361..70021925

Molecular Weight (calculated)

70694.7 Da

IEP (calculated)

10.208

GRAVY (calculated)

-0.927

Length

642 amino acids

Sequence
(BLAST)

001: MAEIPSSSPK LTQPSNPIMD TTNQVTAGGA APSTTSSNPG ITMTSPSNNN SIAQSPSIDL PQIPLAQSQQ QQHQHQIQMP QPQQMQQQQQ QQLTQSQQQQ
101: QQQQQMQLQQ QQSNSSNLNG SNSNLMSASN FQMQQNLQRS PSMAARMSQL QMQQQQQQFG LMRQQSGGLY GQMNFGVGGT SLQQQQQQQL QQQQLQQQFQ
201: QQQQQQQQQN QQQQQIGGQM GSGNLARAAL MGQTGHLPML SGQAAAAAAA VAQFNLQSQF LNSPRQKAGL MQGNQFHTGN SHGQSLQAMG MMGSLNMSSQ
301: LRANGALAYA QRVNQGQLRQ QQLSQQNPLT TTQKISAQSL PRTSFANSQL PGLTQNGQSA IMQNNSSQQQ WLKPMPAIST PNSPSFRLQQ QRQQMLLQHQ
401: NSMGLNPQQL SQIVQQQQQI GHPQMHQQQQ QQQQQQQLSH QQQSSPRMAA PAGQKSLSLT GSQPDATGSG TTTPGGSSSQ GTEASNQLLG KRKIQDLVSQ
501: VDAQGKLDPE VEDLLLEIAD DFIDSVTTFA CNLAKHRKSS TLESKDVLLH LEKNWHLTIP GFSSEERKQY PENSSSDLHK KRLDVIRTLM ETSQTETSTN
601: SSAKETVRPV AGDSNHMIRP PSSDNMVSQS NASQMLHEMT RF

Best Arabidopsis Sequence Match ( AT1G17440.1 )
(BLAST)

001: MAEPIPSSSL SPKSLQSPNP MEPSPASSTP LPSSSSQQQQ LMTAPISNSV NSAASPAMTV TTTEGIVIQN NSQPNISSPN PTSSNPPIGA QIPSPSPLSH
101: PSSSLDQQTQ TQQLVQQTQQ LPQQQQQIMQ QISSSPIPQL SPQQQQILQQ QHMTSQQIPM SSYQIAQSLQ RSPSLSRLSQ IQQQQQQQHQ GQYGNVLRQQ
201: AGLYGTMNFG GSGSVQQSQQ NQQMVNPNMS RAGLVGQSGH LPMLNGAAGA AQMNIQPQLL AASPRQKSGM VQGSQFHPGS SGQQLQGMQA MGMMGSLNLT
301: SQMRGNPALY AQQRINPGQM RQQLSQQNAL TSPQVQNLQR TSSLAFMNPQ LSGLAQNGQA GMMQNSLSQQ QWLKQMSGIT SPNSFRLQPS QRQALLLQQQ
401: QQQQQQLSSP QLHQSSMSLN QQQISQIIQQ QQQQSQLGQS QMNQSHSQQQ LQQMQQQLQQ QPQQQMQQQQ QQQQQMQINQ QQPSPRMLSH AGQKSVSLTG
501: SQPEATQSGT TTPGGSSSQG TEATNQLLGK RKIQDLVSQV DVHAKLDPDV EDLLLEVADD FIDSVTSFAC SLAKHRKSSV LEPKDILLHL EKNLHLTIPG
601: FSSEDKRQTK TVPTDLHKKR LAMVRALLES SKPETNASNS KETMRQAMVN PNGPNHLLRP SQSSEQLVSQ TSGPHILQHM TRY

Arabidopsis Description

TAF12BTranscription initiation factor TFIID subunit 12b [Source:UniProtKB/Swiss-Prot;Acc:Q940A7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.