Factsheet for Solyc06g065700.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g122020.2.1
Solyc04g010090.2.1
Solyc04g077290.1.1
Solyc04g078050.2.1
Solyc06g062900.2.1
Solyc06g065700.2.1
Solyc07g006820.2.1
Solyc09g008150.1.1
Solyc09g009680.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25150.1	Solyc03g122020.2.1	AT1G17440.1	17340043
AT5G25150.1	Solyc06g062900.2.1	AT1G17440.1	17340043
AT5G25150.1	Solyc04g078050.2.1	AT1G27720.1	17340043
AT5G25150.1	Solyc07g006820.2.1	AT1G32750.1	17340043
AT5G25150.1	Solyc04g010090.2.1	AT1G54140.1	17340043
AT5G25150.1	Solyc09g009680.2.1	AT3G10070.1	17340043
AT5G25150.1	Solyc09g008150.1.1	AT4G34340.1	17340043
AT5G25150.1	Solyc06g065700.2.1	AT5G25150.1	17340043
AT5G25150.1	Solyc04g077290.1.1	AT5G45600.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P22400_001	Banana	cytosol	21.17	84.8
Zm00001d044810_P001	Maize	nucleus	15.18	80.62
VIT_04s0008g05780.t01	Wine grape	nucleus	76.64	77.66
KRH52333	Soybean	nucleus	72.41	74.81
KRH61671	Soybean	nucleus	72.99	74.74
AT5G25150.1	Thale cress	nucleus	71.82	73.54
Bra036534.1-P	Field mustard	nucleus	71.24	73.05
HORVU0Hr1G022460.1	Barley	nucleus	52.12	73.01
CDY19814	Canola	nucleus	71.09	72.9
CDX87098	Canola	nucleus	70.66	72.46
Zm00001d053142_P001	Maize	nucleus	16.93	72.05
TraesCS7B01G416400.1	Wheat	nucleus	50.95	71.37
KRG99418	Soybean	cytosol, extracellular, plastid	9.05	71.26
CDY05473	Canola	nucleus	68.76	70.72
CDY05378	Canola	nucleus	68.47	70.63
Bra020485.1-P	Field mustard	nucleus	68.47	70.42
KXG20501	Sorghum	nucleus	67.15	70.02
TraesCS5B01G318400.1	Wheat	nucleus	67.01	69.97
TraesCS5D01G324200.2	Wheat	nucleus	66.86	69.82
TraesCS5A01G317800.1	Wheat	nucleus	66.86	69.82
Os06t0649500-01	Rice	nucleus	66.57	69.72
TraesCS7A01G508300.2	Wheat	nucleus	66.57	69.51
HORVU7Hr1G113760.2	Barley	nucleus	66.42	69.36
TraesCS7D01G496500.1	Wheat	nucleus	65.69	69.12
KRH05348	Soybean	nucleus	66.13	68.84
Zm00001d046810_P002	Maize	nucleus	66.86	68.05
Zm00001d025112_P001	Maize	cytosol, nucleus, plastid	17.96	67.21
GSMUA_Achr7P26980_001	Banana	nucleus	71.09	63.74
GSMUA_Achr9P22410_001	Banana	cytosol	34.45	63.27
Zm00001d016330_P001	Maize	extracellular	13.28	62.76
KRH15679	Soybean	cytosol	10.22	55.12
Solyc07g041080.2.1	Tomato	cytosol, nucleus	11.97	25.39
Solyc12g009030.1.1	Tomato	cytosol, nucleus	11.24	23.84
Solyc12g049100.1.1	Tomato	cytosol	11.39	22.1
Solyc04g016510.2.1	Tomato	nucleus	15.33	21.52
Solyc05g014420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.39	21.08
Solyc09g074400.2.1	Tomato	cytosol	10.51	20.51
Solyc12g088630.1.1	Tomato	cytosol	14.74	19.77
Solyc12g088540.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	14.31	19.64
Solyc05g014460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	10.95	17.9
Solyc12g088620.1.1	Tomato	cytosol	13.58	17.82
Solyc04g078320.2.1	Tomato	cytosol	15.33	17.74
Solyc09g009410.2.1	Tomato	cytosol, nucleus	8.32	16.38
Solyc12g088570.1.1	Tomato	cytosol	8.47	15.93
Solyc03g097160.2.1	Tomato	nucleus	17.52	13.78
Solyc10g039190.1.1	Tomato	nucleus	17.23	12.42

Protein Annotations

Gene3D:1.25.40.500	MapMan:15.3.4.3.1	MapMan:15.3.5.3.5	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR015943	InterPro:IPR017986
InterPro:IPR037264	UniProt:K4C7J9	InterPro:LisH	PFAM:PF00400	PFAM:PF04494	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PANTHER:PTHR19879	SMART:SM00320
SUPFAM:SSF160897	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc06g065700.2	EnsemblPlants:Solyc06g065700.2.1	InterPro:TFIID_NTD2	InterPro:TFIID_NTD2_sf
UniParc:UPI000276598F	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:41123330..41138858

Molecular Weight (calculated)

75902.6 Da

IEP (calculated)

6.844

GRAVY (calculated)

-0.375

Length

685 amino acids

Sequence
(BLAST)

001: MDEEEIEKAV VAYLKKKGFK QTEIAFQEEQ QVNKNSSSSI HNNNNSANSQ IDPDLTKKIL SFSEFETSPQ RYQEEYSKLR SWAYSSLDLY KHELLRVLYP
101: VFIHCFMELV ARGYIQEARA FFNSYREDHE MTHLRDLQKL EGVLSPSHLE EMEFAHSIRV SKVNIKMCQY SYDLLLQYLH KTESITMLGI INERINFQVS
201: PGQPGSISGD TEVVTLVASG HDASLINQKE VLWGMLEDSL EERLEKTGGS VPDSEKFDGD PKEGEVEENK KKSIEGGKHG APLKKLKKDK VGIATGKSSR
301: TESSTVTTAP RVKPELALPA IPVEVELSIL EDLRNRVQLS NASLPSVSFY TFVNTHNGLN CASISHDGSL VAGGFSDSSV KVWDMAKLGE QTGPSFLQGE
401: TDSPSSEHVL GANGGRRCYT LLQGHSGPVY SASFSPHGDF LLSSSSDSTV RLWSTKLNAN VVCYKGHNYP VWDVQFSPAG HYFASSSHDR TARIWSVDRI
501: QPLRIMAGHL SDVDCVRWHA NCNYIATGSS DKTVRLWDVQ SGDCVRIFIG HRSMILSLAM SPDGRYMASG DEDGTVMMWD LSSGRCITPL TGHSSCVWSL
601: AFSGEGSLLA SGSADCTVKL WDVTTSTRAP LKEENKSGGN NRLRLLKTLP TKATPIYALH FSRRNLLFAA GAFSKSARVP CFKVS

Best Arabidopsis Sequence Match ( AT5G25150.1 )
(BLAST)

001: MDPEQINEFV VGYLKKKGFS SAAKDLESYH HQNNNGSSFT SVDYHNDPEL TKLIRSFSQQ EDDPTRYREG YSKLRSWAYN SLDLYKHELL RVMYPVFIHC
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RFSRRNLLFA AGAISKPAN

Arabidopsis Description

TAF5Transcription initiation factor TFIID subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6S7B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.