Factsheet for Zm00001d025112_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007933_P001
Zm00001d008371_P001
Zm00001d012396_P003
Zm00001d016330_P001
Zm00001d025112_P001
Zm00001d029473_P001
Zm00001d029598_P003
Zm00001d039729_P004
Zm00001d039731_P002
Zm00001d041530_P001
Zm00001d041766_P001
Zm00001d042792_P002
Zm00001d042879_P002
Zm00001d044810_P001
Zm00001d046579_P019
Zm00001d046810_P002
Zm00001d047265_P001
Zm00001d053142_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25150.1	Zm00001d012396_P003	AT1G17440.1	17340043
AT5G25150.1	Zm00001d042879_P002	AT1G17440.1	17340043
AT5G25150.1	Zm00001d029598_P003	AT1G27720.1	17340043
AT5G25150.1	Zm00001d039729_P004	AT1G27720.1	17340043
AT5G25150.1	Zm00001d039731_P002	AT1G27720.1	17340043
AT5G25150.1	Zm00001d046579_P019	AT1G32750.1	17340043
AT5G25150.1	Zm00001d007933_P001	AT1G54140.1	17340043
AT5G25150.1	Zm00001d008371_P001	AT1G54140.1	17340043
AT5G25150.1	Zm00001d029473_P001	AT1G54140.1	17340043
AT5G25150.1	Zm00001d047265_P001	AT1G54140.1	17340043
AT5G25150.1	Zm00001d042792_P002	AT3G10070.1	17340043
AT5G25150.1	Zm00001d041530_P001	AT4G34340.1	17340043
AT5G25150.1	Zm00001d041766_P001	AT4G34340.1	17340043
AT5G25150.1	Zm00001d016330_P001	AT5G25150.1	17340043
AT5G25150.1	Zm00001d025112_P001	AT5G25150.1	17340043
AT5G25150.1	Zm00001d044810_P001	AT5G25150.1	17340043
AT5G25150.1	Zm00001d046810_P002	AT5G25150.1	17340043
AT5G25150.1	Zm00001d053142_P001	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P22400_001	Banana	cytosol	72.68	77.78
Zm00001d044810_P001	Maize	nucleus	51.37	72.87
Zm00001d016330_P001	Maize	extracellular	50.27	63.45
KRG99418	Soybean	cytosol, extracellular, plastid	28.96	60.92
KRH15679	Soybean	cytosol	33.88	48.82
Zm00001d053142_P001	Maize	nucleus	32.24	36.65
TraesCS7B01G416400.1	Wheat	nucleus	77.05	28.83
HORVU0Hr1G022460.1	Barley	nucleus	77.05	28.83
KXG20501	Sorghum	nucleus	81.42	22.68
Zm00001d046810_P002	Maize	nucleus	81.97	22.29
TraesCS7D01G496500.1	Wheat	nucleus	76.5	21.51
TraesCS5A01G317800.1	Wheat	nucleus	77.05	21.49
TraesCS7A01G508300.2	Wheat	nucleus	77.05	21.49
TraesCS5D01G324200.2	Wheat	nucleus	77.05	21.49
HORVU7Hr1G113760.2	Barley	nucleus	77.05	21.49
TraesCS5B01G318400.1	Wheat	nucleus	76.5	21.34
Os06t0649500-01	Rice	nucleus	75.96	21.25
KRH05348	Soybean	nucleus	69.95	19.45
CDY05378	Canola	nucleus	69.4	19.13
VIT_04s0008g05780.t01	Wine grape	nucleus	70.49	19.08
Bra020485.1-P	Field mustard	nucleus	69.4	19.07
CDY05473	Canola	nucleus	69.4	19.07
KRH52333	Soybean	nucleus	68.85	19.0
CDX87098	Canola	nucleus	68.85	18.86
AT5G25150.1	Thale cress	nucleus	68.85	18.83
CDY19814	Canola	nucleus	68.31	18.71
Bra036534.1-P	Field mustard	nucleus	68.31	18.71
KRH61671	Soybean	nucleus	67.76	18.54
Solyc06g065700.2.1	Tomato	nucleus	67.21	17.96
GSMUA_Achr7P26980_001	Banana	nucleus	70.49	16.88
Zm00001d048691_P001	Maize	cytosol, extracellular, mitochondrion	21.86	13.47
Zm00001d019299_P001	Maize	cytosol	21.86	11.46
Zm00001d025048_P003	Maize	cytosol	23.5	7.66
Zm00001d029188_P006	Maize	cytosol, nucleus, plastid, vacuole	22.95	7.62
Zm00001d004383_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	22.95	7.02
Zm00001d043471_P001	Maize	cytosol	14.21	6.81
Zm00001d026195_P002	Maize	cytosol	25.68	5.09
Zm00001d002483_P002	Maize	mitochondrion	25.14	5.05
Zm00001d027706_P004	Maize	nucleus	22.95	4.38
GSMUA_Achr9P22410_001	Banana	cytosol	1.09	0.54

Protein Annotations

MapMan:15.3.4.3.1	MapMan:15.3.5.3.5	Gene3D:2.130.10.10	UniProt:A0A1D6J503	ProteinID:AQK43017.1	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515
GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19879	PANTHER:PTHR19879:SF1
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0008434625	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d025112	EnsemblPlants:Zm00001d025112_P001	EnsemblPlants:Zm00001d025112_T001	:

Description

Transcription initiation factor TFIID subunit 5

Coordinates

chr10:-:104931220..104932968

Molecular Weight (calculated)

20083.9 Da

IEP (calculated)

6.641

GRAVY (calculated)

-0.023

Length

183 amino acids

Sequence
(BLAST)

001: MAGHLSDVDC VQWHVNCNYI GTGSSDKTVR LWDVQTGECI RMFIGHRSMV LSLAMSPDGR YMASGDEDGT IMIWDLSTGC CVSPLLGHSS CVWTLAFSCE
101: GALLASGSAD CTVKLWDVAF STKAMKTEDT KGSSSANRLR LLKSLPTKSA PVYSLRVRNF SFIQHDFWSE NFYPQFCSPA GNV

Best Arabidopsis Sequence Match ( AT5G25150.1 )
(BLAST)

001: MDPEQINEFV VGYLKKKGFS SAAKDLESYH HQNNNGSSFT SVDYHNDPEL TKLIRSFSQQ EDDPTRYREG YSKLRSWAYN SLDLYKHELL RVMYPVFIHC
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RFSRRNLLFA AGAISKPAN

Arabidopsis Description

TAF5Transcription initiation factor TFIID subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6S7B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.