Factsheet for Zm00001d025048_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0405100-01	Rice	cytosol	89.66	90.63
EES11818	Sorghum	nucleus, plastid	96.79	90.2
TraesCS2B01G255700.1	Wheat	nucleus	87.7	88.17
TraesCS2D01G235100.1	Wheat	nucleus	87.34	88.13
TraesCS2A01G227200.3	Wheat	cytosol	87.34	87.66
Zm00001d004383_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	93.05	87.29
HORVU2Hr1G053480.9	Barley	mitochondrion	84.49	84.64
KRH04500	Soybean	cytosol	39.39	78.93
GSMUA_Achr6P34780_001	Banana	cytosol	57.93	69.3
PGSC0003DMT400039889	Potato	cytosol	7.13	68.97
PGSC0003DMT400093628	Potato	cytosol, mitochondrion	42.96	68.27
CDY57442	Canola	cytosol	26.56	67.73
Solyc05g014420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	44.03	66.76
PGSC0003DMT400088760	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	56.86	66.32
KRH28415	Soybean	nucleus	65.78	66.13
Solyc04g078320.2.1	Tomato	cytosol	69.7	66.05
KRH04498	Soybean	mitochondrion	30.66	65.9
Solyc12g088540.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	57.4	64.53
VIT_07s0129g00690.t01	Wine grape	nucleus	68.45	64.32
KRH61363	Soybean	nucleus	64.71	63.91
Solyc12g049100.1.1	Tomato	cytosol	39.93	63.46
PGSC0003DMT400093026	Potato	cytosol	57.75	63.41
Solyc12g088630.1.1	Tomato	cytosol	57.04	62.62
Solyc12g088620.1.1	Tomato	cytosol	57.93	62.26
Solyc05g014460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	45.99	61.58
CDY18648	Canola	cytosol	62.21	61.01
KRH58014	Soybean	nucleus	66.84	60.1
AT5G67320.1	Thale cress	cytosol	64.71	59.22
Bra037118.1-P	Field mustard	cytosol	63.46	58.17
CDX81324	Canola	cytosol	63.64	58.14
Solyc12g088570.1.1	Tomato	cytosol	37.61	57.97
KRH52050	Soybean	cytosol, nucleus, peroxisome	65.24	57.28
KRH04503	Soybean	nucleus	27.81	46.71
VIT_18s0001g09600.t01	Wine grape	cytosol	37.61	38.57
CDY57444	Canola	cytosol, mitochondrion	19.79	38.28
Zm00001d044810_P001	Maize	nucleus	6.95	30.23
Zm00001d025112_P001	Maize	cytosol, nucleus, plastid	7.66	23.5
Zm00001d019299_P001	Maize	cytosol	13.9	22.35
Zm00001d048691_P001	Maize	cytosol, extracellular, mitochondrion	11.41	21.55
Zm00001d016330_P001	Maize	extracellular	5.53	21.38
Zm00001d029188_P006	Maize	cytosol, nucleus, plastid, vacuole	17.47	17.79
Zm00001d043471_P001	Maize	cytosol	10.87	15.97
Zm00001d046810_P002	Maize	nucleus	18.36	15.3
Zm00001d053142_P001	Maize	nucleus	4.28	14.91
Zm00001d002483_P002	Maize	mitochondrion	14.62	9.01
Zm00001d026195_P002	Maize	cytosol	14.79	8.99
Zm00001d027706_P004	Maize	nucleus	14.79	8.65

Protein Annotations

Gene3D:1.20.960.30	MapMan:12.3.2.1.4.3	Gene3D:2.130.10.10	UniProt:A0A1D6J4G2	ProteinID:AQK42853.1	ncoils:Coil
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR006594
InterPro:IPR015943	InterPro:IPR017986	InterPro:LisH	PFAM:PF00400	PFAM:PF08513	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50896	PANTHER:PTHR22846	PANTHER:PTHR22846:SF2
SMART:SM00320	SMART:SM00667	SUPFAM:SSF50978	UniParc:UPI000844246C	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d025048	EnsemblPlants:Zm00001d025048_P003	EnsemblPlants:Zm00001d025048_T003
SEG:seg	:	:	:	:	:

Description

WD-40 repeat family protein

Coordinates

chr10:-:101561345..101582556

Molecular Weight (calculated)

63264.9 Da

IEP (calculated)

5.659

GRAVY (calculated)

-0.737

Length

561 amino acids

Sequence
(BLAST)

001: MGVLTSTELN FLVFRYLQES GFIHAAFTLG YEAGIHKGGI DGNAVPPGAL ITIVQKGLQY IELEANNDDN DDEVERDFAL LEPLEIITKD VEELQQIVKK
101: RKMERSQTER EKDKGKEKER NEEHERRPGG EREREHHDRE KEQVREKDKS EKDRDHDKEK EKEKERERQQ AERIDKVKHE DDSLAGGGRT PMDVSTTAQE
201: ISNTDVTVLE GHSSEVFACA WSPSGSLLAS GSGDSTARIW TIPDGPCGSN MQSSPPGVHV LKHFKGRTNE KSKDVTTLDW NGEGTLLATG SYDGQARIWS
301: RDGDLKQTLF KHKGPIFSLK WNKKGDFLLS GSVDKTAIVW DTKTWECKQQ FEFHSAPTLD VDWRNNNSFA TCSTDNMIYV CKIGEQRPVK AFSGHQSEVN
401: AIKWDPTGSL LASCSDDWTA KIWSMKQDKC VFDFKEHTKE IYTIRWSPTG PGTNNPNQQL LLASASFDST IKLWEVEQGC LLYSLSGHRQ PVYSVAFSPD
501: GEYLASGSLD QCLHIWSVKE GRILKTYRGT GGIFEVCWNK EGSKIAACFS NNTVCVMDFR M

Best Arabidopsis Sequence Match ( AT5G67320.1 )
(BLAST)

001: MSSLTSVELN FLVFRYLQES GFTHAAFTLG YEAGINKSNI DGNMVPPGAL IKFVQKGLQY MEMEANLSNS EVDIDEDFSF FQPLDLISKD VKELQDMLRE
101: KKRKERDMEK ERDRSKENDK GVEREHEGDR NRAKEKDRHE KQKERERERE KLEREKERER EKIEREKERE REKMEREIFE REKDRLKLEK EREIERERER
201: EKIEREKSHE KQLGDADREM VIDQTDKEIA GDGSTGAEPM DIVMTPTSQT SHIPNSDVRI LEGHTSEVCA CAWSPSASLL ASGSGDATAR IWSIPEGSFK
301: AVHTGRNINA LILKHAKGKS NEKSKDVTTL DWNGEGTLLA TGSCDGQARI WTLNGELIST LSKHKGPIFS LKWNKKGDYL LTGSVDRTAV VWDVKAEEWK
401: QQFEFHSGPT LDVDWRNNVS FATSSTDSMI YLCKIGETRP AKTFTGHQGE VNCVKWDPTG SLLASCSDDS TAKIWNIKQS TFVHDLREHT KEIYTIRWSP
501: TGPGTNNPNK QLTLASASFD STVKLWDAEL GKMLCSFNGH REPVYSLAFS PNGEYIASGS LDKSIHIWSI KEGKIVKTYT GNGGIFEVCW NKEGNKIAAC
601: FADNSVCVLD FRM

Arabidopsis Description

HOS15HOS15 [Source:UniProtKB/TrEMBL;Acc:A0A178UQT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.