Factsheet for Zm00001d027706_P004

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95491	Sorghum	nucleus	94.16	96.37
TraesCS4A01G370000.1	Wheat	nucleus	83.21	84.89
TraesCS4B01G317800.1	Wheat	nucleus	82.79	84.47
Os03t0151700-01	Rice	nucleus	81.44	83.09
HORVU4Hr1G083410.1	Barley	endoplasmic reticulum	82.9	78.48
GSMUA_Achr11P...	Banana	cytosol, golgi, plastid	69.97	71.38
VIT_08s0007g04690.t01	Wine grape	nucleus	61.94	62.4
KRH67774	Soybean	nucleus, plastid	60.69	61.72
KRG96051	Soybean	nucleus	59.96	60.91
PGSC0003DMT400066026	Potato	nucleus	59.85	60.42
Solyc10g039190.1.1	Tomato	nucleus	59.44	60.0
CDY22910	Canola	nucleus	58.08	59.83
CDY54973	Canola	nucleus	57.87	59.61
Bra039543.1-P	Field mustard	nucleus	57.87	58.79
AT3G21540.1	Thale cress	nucleus	58.29	58.53
PGSC0003DMT400034236	Potato	cytosol, nucleus, plastid	56.73	57.93
Zm00001d044810_P001	Maize	nucleus	3.86	28.68
Zm00001d025112_P001	Maize	cytosol, nucleus, plastid	4.38	22.95
Zm00001d016330_P001	Maize	extracellular	3.23	21.38
Zm00001d019299_P001	Maize	cytosol	7.51	20.63
Zm00001d053142_P001	Maize	nucleus	3.44	20.5
Zm00001d048691_P001	Maize	cytosol, extracellular, mitochondrion	5.63	18.18
Zm00001d046810_P002	Maize	nucleus	11.37	16.2
Zm00001d002483_P002	Maize	mitochondrion	14.7	15.49
Zm00001d043471_P001	Maize	cytosol	6.15	15.45
Zm00001d026195_P002	Maize	cytosol	14.39	14.95
Zm00001d025048_P003	Maize	cytosol	8.65	14.79
Zm00001d029188_P006	Maize	cytosol, nucleus, plastid, vacuole	7.82	13.61
Zm00001d004383_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	8.24	13.21

Protein Annotations

EntrezGene:100501489	MapMan:17.1.3.2.1.3.3	Gene3D:2.130.10.10	UniProt:A0A1D6JNW9	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	ProteinID:ONL93719.1
PFAM:PF00400	PFAM:PF04003	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19853	PANTHER:PTHR19853:SF0	SMART:SM00320	SUPFAM:SSF50978	InterPro:SSU_processome_Utp12	UniParc:UPI0008453A93
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d027706
EnsemblPlants:Zm00001d027706_P004	EnsemblPlants:Zm00001d027706_T004	SEG:seg	:	:	:

Description

transducin family protein / WD-40 repeat family protein

Coordinates

chr1:+:11584065..11590167

Molecular Weight (calculated)

106385.0 Da

IEP (calculated)

7.004

GRAVY (calculated)

-0.279

Length

959 amino acids

Sequence
(BLAST)

001: MVKAYLRYEP ALTFGVIASP ESNVVYDPSG RRLLAAALDR LAAWDIKRGL PSVSFAPSSS SPSLAVSCIA SSHSAAVSSS VPLIPLRLSL SSALFEFGRL
101: IASGHADGSI RLWDAETGAC EATLHGHRSA ASALRFGPSG AVLASGSKDC DVILWDVVAQ AGLFRLRGHR DQVTDLVFLD SGKKLMSCSK DKFIRVWDLE
201: TQHCLQIVGG HRSEIWSMDV DPSERFLVSG SADPELQVFR IRQSVEEGED WSKWDVLKLF GEIPRQSKER VANVRFNRDG SLVVCQVAGK TADIYRVLDE
301: TEAARKAKRR VSRKKEKASA KSMIAEENGT IIDPLPVQNL QNPTVIVTDV FKLFQVLRAS KKICSITFSP SNPPRGCLAT LSLSLNNNML ETYSVDKEKV
401: SKMYSVEMHG HRSDIRSVSL NSEDNLLMST SHNAVKIWNP STGECLRTID SGYGLSSAFV GNRYALVGTK SGTLEIMDIA SGSLTEAIEA HAGSIRSIVP
501: IPDEDGTVGA RGFVTGSADH DVKFWEYQLV QKSDNDSKQL TVTNVRTLKM TEDVLAVSIS PEGKHIAVAL LDCHVKVFHM DTLKPSLNLY GHKLPVLCMD
601: ISSDGALLVT GSADKNLKIW GMDFGDCHRS IFAHSDSVMD VKFVYRTHYM FSVGKDRTMK YWDADKFELL LTLEGHHAEV WCLTLSSRGD FVVTGSHDRS
701: IRRWDRTEEQ LFIEEEKEKR LEETFEADLE NDNDYRYGQK DDAPDEGSVG VPGRKTKETV TSADAIMDAL DTAEEELKRI NQHKMEEQIT AKAAKFQPNV
801: IMQGHSPSDY VLNVVSSIRP NDLEQALLAL PFSDALKLMS YLKEWSLVPS KVELVCRVCL VLLQTHHNQL TATPAARSLL TELKDILYCR VKECKDTIGF
901: NLAAMDHIKE LLALRSDAPF RDAKAKLMEI KKEQSKRSSS RLDGDEKRKK KRKKASAES

Best Arabidopsis Sequence Match ( AT3G21540.1 )
(BLAST)

001: MVKAYQRYDA ATSFGVISSV DSNIAYDSTG KYVLAPALEK VGIWHVRQGV CSKTLTPSSS RGGPSLAVTS IASSASSLVA VGYADGSIRI WDTEKGTCEV
101: NFNSHKGAVT ALRYNKVGSM LASGSKDNDI ILWDVVGESG LFRLRGHRDQ VTDLVFLDGG KKLVSSSKDK FLRVWDLETQ HCMQIVSGHH SEVWSVDTDP
201: EERYVVTGSA DQELRFYAVK EYSSNGSLVS DSNANEIKAS EEHSTENKWE ILKLFGEIQR QTKDRVARVR FNVSGKLLAC QMAGKTIEIF RVLDEAEAKQ
301: KAKRRLRRKE KKSSKVGDEN STANGEASAK IELADAVSSP TVLDVFKLLQ VIRAGRKISS FSFCPTAPKE SLGTLALSLN NNSLEFYSLK SSENAKTVTI
401: EHQGHRSDVR SVTLSEDNTL LMSTSHSEVK IWNPSTGSCL RTIDSGYGLC SLIVPQNKYG IVGTKSGVLE IIDIGSATKV EEVKAHGGTI WSITPIPNDS
501: GFVTVSADHE VKFWEYQVKQ KSGKATKKLT VSNVKSMKMN DDVLAVAISP DAKHIAVALL DSTVKVFYMD SLKFYLSLYG HKLPVMCIDI SSDGELIVTG
601: SQDKNLKIWG LDFGDCHKSI FAHGDSVMGV KFVRNTHYLF SIGKDRLVKY WDADKFEHLL TLEGHHAEIW CLAISNRGDF LVTGSHDRSM RRWDRSEEPF
701: FLEEEKEKRL EELFESEIDN AADDRHGPME EIPEEGVAAL AGKKTIDVLS AADSIIDALE VAEDETKRHA AYEEEKTKGK VPEYLPNAVM FGLSPSEYVL
801: RAISNVRTND LEQTLLALPF SDSLKFLCYM KDWSLIPEKV ELVSRIATII LQTHHNQLVT TPSARPILSV LRDILYSEIK ACKDTIGFNL AAMDHVKQMM
901: DARSDAPFKD AKAKLLEIRS QQAKRMASRG DTKMEKKRKK KQKKLEEGQH GHALF

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LVF2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.