Factsheet for Solyc10g039190.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066026	Potato	nucleus	96.84	96.84
VIT_08s0007g04690.t01	Wine grape	nucleus	74.63	74.47
KRG96051	Soybean	nucleus	72.63	73.09
KRH67774	Soybean	nucleus, plastid	72.21	72.75
CDY22910	Canola	nucleus	68.74	70.14
CDY54973	Canola	nucleus	68.53	69.92
Bra039543.1-P	Field mustard	nucleus	68.84	69.28
AT3G21540.1	Thale cress	nucleus	68.42	68.06
GSMUA_Achr11P...	Banana	cytosol, golgi, plastid	66.0	66.7
TraesCS4A01G370000.1	Wheat	nucleus	60.74	61.38
TraesCS4B01G317800.1	Wheat	nucleus	60.63	61.28
EER95491	Sorghum	nucleus	59.79	60.62
Os03t0151700-01	Rice	nucleus	59.58	60.21
Zm00001d027706_P004	Maize	nucleus	60.0	59.44
HORVU4Hr1G083410.1	Barley	endoplasmic reticulum	60.74	56.96
Solyc07g041080.2.1	Tomato	cytosol, nucleus	8.11	23.84
Solyc12g009030.1.1	Tomato	cytosol, nucleus	7.58	22.29
Solyc09g074400.2.1	Tomato	cytosol	7.68	20.8
Solyc12g049100.1.1	Tomato	cytosol	7.26	19.55
Solyc12g088540.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	10.11	19.24
Solyc12g088630.1.1	Tomato	cytosol	10.0	18.59
Solyc04g016510.2.1	Tomato	nucleus	9.47	18.44
Solyc09g009410.2.1	Tomato	cytosol, nucleus	6.53	17.82
Solyc12g088620.1.1	Tomato	cytosol	9.68	17.62
Solyc05g014420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	6.84	17.57
Solyc06g065700.2.1	Tomato	nucleus	12.42	17.23
Solyc05g014460.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	7.58	17.18
Solyc04g078320.2.1	Tomato	cytosol	10.42	16.72
Solyc12g088570.1.1	Tomato	cytosol	6.32	16.48
Solyc03g097160.2.1	Tomato	nucleus	14.74	16.07

Protein Annotations

MapMan:17.1.3.2.1.3.3	Gene3D:2.130.10.10	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0030490	GO:GO:0030515	GO:GO:0032040	GO:GO:0034388	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:K4CZE3	PFAM:PF00400	PFAM:PF04003	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19853	PANTHER:PTHR19853:SF0	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320
SUPFAM:SSF50998	InterPro:SSU_processome_Utp12	EnsemblPlantsGene:Solyc10g039190.1	EnsemblPlants:Solyc10g039190.1.1	UniParc:UPI000276AFD9	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:+:20778609..20786267

Molecular Weight (calculated)

105086.0 Da

IEP (calculated)

6.929

GRAVY (calculated)

-0.310

Length

950 amino acids

Sequence
(BLAST)

001: MVKAYLRYEP AASFGVIVSG ESNIVYDSSG KHLLAAALEK IGIWHVRQGL CTKTLAPLPS SDSKGPSLAV TSMASSSSSQ IASGYAEGSI RIWDSEKGIC
101: ETTLNGHKGA VTALRYNKLG SLLASGSKDN DIILWDAVGE TGLFRLRGHR DQVTDLVFLD FDKKLVTASK DKFLRVWDLD TQHCMQIISG HHTEIWSIDI
201: DPEERFLVTG SADPELRFYA IKHELADGQL IANKNETDVK DLPAENKWEV LKSFGEIQRQ SKDRVATVRF NKSGNLLACQ VAGKTVEIFR VLDESESKRK
301: AKRRISRKKE KKSSKQGLEA TEKGETNIGA EGGNNPVVTV LDIFKLHQTL RAGKKISSIS FSPVASKNLL ATLALSLNNN LLEFHAIESN STSKLSAIEL
401: QGHRADVRSV TLSSDNTLLM STSHSAIKIW NPTTGSCLRT IDSGYGLCGL FVPGNKYAVV GTKGGTLEFI DVRSGTCVDV VEAHGGSVQS IALTPDGTGF
501: LTGSADHDIK FWEFQMVQKS GEGSKHLTAS PTSSLKMNDD VLVVAASPDG KFIAVALLDS TVKVYYMDSL KFFLSLYGHK LPVLCMDISS DGDLLVSGSA
601: DKNVKIWGLD FGDCHKSLFA HADSVMGVKF VRNTHYFFTV GKDRLVKYWD ADKFELLLTL EGHHAEVWCL AMSNRGDFIV TGSHDRSIRR WDRTDEPFFI
701: EEEKEKRLEE MFESDIDNAF ENKYGSKEEI PEEGAVALAG KKTQETLTAT DSIIEALDMA DAELKRITEH EEDKTKGRVS EFRSNILMLG LSPSDYVLRA
801: LSSVHTNDLE QTLMALPFSD ALDLLSYLES WASAIDKVEL VGRVAVLLVQ LHHHQLVSTV SARPLITRLS DSLAAKVKER KDIMGFNLAG MDHSTQFMSS
901: RSDAVFRDKK TKLLEIRAHN DKRTEEREDT KQEKKRKKKQ KKSDGGHVWS

Best Arabidopsis Sequence Match ( AT3G21540.1 )
(BLAST)

001: MVKAYQRYDA ATSFGVISSV DSNIAYDSTG KYVLAPALEK VGIWHVRQGV CSKTLTPSSS RGGPSLAVTS IASSASSLVA VGYADGSIRI WDTEKGTCEV
101: NFNSHKGAVT ALRYNKVGSM LASGSKDNDI ILWDVVGESG LFRLRGHRDQ VTDLVFLDGG KKLVSSSKDK FLRVWDLETQ HCMQIVSGHH SEVWSVDTDP
201: EERYVVTGSA DQELRFYAVK EYSSNGSLVS DSNANEIKAS EEHSTENKWE ILKLFGEIQR QTKDRVARVR FNVSGKLLAC QMAGKTIEIF RVLDEAEAKQ
301: KAKRRLRRKE KKSSKVGDEN STANGEASAK IELADAVSSP TVLDVFKLLQ VIRAGRKISS FSFCPTAPKE SLGTLALSLN NNSLEFYSLK SSENAKTVTI
401: EHQGHRSDVR SVTLSEDNTL LMSTSHSEVK IWNPSTGSCL RTIDSGYGLC SLIVPQNKYG IVGTKSGVLE IIDIGSATKV EEVKAHGGTI WSITPIPNDS
501: GFVTVSADHE VKFWEYQVKQ KSGKATKKLT VSNVKSMKMN DDVLAVAISP DAKHIAVALL DSTVKVFYMD SLKFYLSLYG HKLPVMCIDI SSDGELIVTG
601: SQDKNLKIWG LDFGDCHKSI FAHGDSVMGV KFVRNTHYLF SIGKDRLVKY WDADKFEHLL TLEGHHAEIW CLAISNRGDF LVTGSHDRSM RRWDRSEEPF
701: FLEEEKEKRL EELFESEIDN AADDRHGPME EIPEEGVAAL AGKKTIDVLS AADSIIDALE VAEDETKRHA AYEEEKTKGK VPEYLPNAVM FGLSPSEYVL
801: RAISNVRTND LEQTLLALPF SDSLKFLCYM KDWSLIPEKV ELVSRIATII LQTHHNQLVT TPSARPILSV LRDILYSEIK ACKDTIGFNL AAMDHVKQMM
901: DARSDAPFKD AKAKLLEIRS QQAKRMASRG DTKMEKKRKK KQKKLEEGQH GHALF

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LVF2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.