Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22910 | Canola | nucleus | 96.82 | 98.17 |
| AT3G21540.1 | Thale cress | nucleus | 81.89 | 80.94 |
| VIT_08s0007g04690.t01 | Wine grape | nucleus | 70.44 | 69.85 |
| KRG96051 | Soybean | nucleus | 69.28 | 69.28 |
| PGSC0003DMT400066026 | Potato | nucleus | 69.6 | 69.16 |
| KRH67774 | Soybean | nucleus, plastid | 69.07 | 69.14 |
| Solyc10g039190.1.1 | Tomato | nucleus | 69.28 | 68.84 |
| PGSC0003DMT400034236 | Potato | cytosol, nucleus, plastid | 66.84 | 67.2 |
| GSMUA_Achr11P... | Banana | cytosol, golgi, plastid | 64.41 | 64.68 |
| TraesCS4B01G317800.1 | Wheat | nucleus | 60.17 | 60.43 |
| TraesCS4A01G370000.1 | Wheat | nucleus | 60.17 | 60.43 |
| EER95491 | Sorghum | nucleus | 58.79 | 59.23 |
| Zm00001d027706_P004 | Maize | nucleus | 58.79 | 57.87 |
| Os03t0151700-01 | Rice | nucleus | 57.31 | 57.55 |
| HORVU4Hr1G083410.1 | Barley | endoplasmic reticulum | 59.85 | 55.77 |
| Bra011139.1-P | Field mustard | cytosol | 7.2 | 21.18 |
| Bra007771.1-P | Field mustard | cytosol | 7.1 | 19.36 |
| Bra004625.1-P | Field mustard | nucleus | 8.9 | 17.18 |
| Bra036534.1-P | Field mustard | nucleus | 12.08 | 17.07 |
| Bra020485.1-P | Field mustard | nucleus | 11.86 | 16.82 |
| Bra016929.1-P | Field mustard | nucleus, plastid | 9.32 | 16.15 |
| Bra023582.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 14.62 | 15.9 |
| Bra008598.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 14.62 | 15.9 |
| Bra037118.1-P | Field mustard | cytosol | 9.22 | 14.22 |
| Bra010317.1-P | Field mustard | cytosol | 3.18 | 13.45 |
| Bra014107.1-P | Field mustard | cytosol, peroxisome, plastid | 7.31 | 10.9 |
Protein Annotations
| MapMan:17.1.3.2.1.3.3 | Gene3D:2.130.10.10 | EnsemblPlantsGene:Bra039543 | EnsemblPlants:Bra039543.1 | EnsemblPlants:Bra039543.1-P | ncoils:Coil |
| InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| UniProt:M4FEM1 | PFAM:PF00400 | PFAM:PF04003 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR19853 | PANTHER:PTHR19853:SF0 | SMART:SM00320 | SUPFAM:SSF50978 | InterPro:SSU_processome_Utp12 |
| UniParc:UPI0002544C62 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
AT3G21540 (E=1e-264) | transducin family protein / WD-40 repeat family protein
Coordinates
chrA01:-:11716733..11721411
Molecular Weight (calculated)
105060.0 Da
IEP (calculated)
6.819
GRAVY (calculated)
-0.322
Length
944 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKAYLRYEQ ASSFGVITSL ESNISYDSTG KHVLAPALEK VGIWHVRQGI CTKTLVPSSS RVGKSLAVTS IASSASTSVA VGYADGSIRI WDSEKGTCET
101: TLNGHKGAVT ALRYNKAGSM FASGSKDNDV ILWDVVGETG LFRLRGHRDQ VTDLVFLDDG KKLVTASKDK FLRVWDLETQ HCMQIISGHH TEVWSVDVDP
201: EEKYLVTGSA DQELRFYAVK QNMPHVSVLS DSNANGVDAS GDHLTENKWE VLVPFGEIQR QTKDRVASVR FHNSGSLLAC QMAGKTVEIF QVLDETDAKR
301: KAKRRLRRKE KKSSKDGVEN ETEKVDTVTT PTVPDVFKLL QVIRAGRKIS SFSFCPITPK DSLATLALSL NNNSLEFYTL KSSENEKTAT IEHQGHRSDV
401: RSVALSADNT LLMSTSHSEV KIWNPSTGSC LRTIDSGYGI CSLIVPKSKY GIVGTKSGIL EIIDIGSATK VEDVEAHGGT IWSIAPIPDD TGFVTVSADH
501: EVKFWEYQVK KAGQEAKQLT VSNVRSMKMN DDVLAVAISP DAKHIAVALL DSTVKVFYVD SLKFFLSLYG HKLPVMCIDI SSDGALIVTG SQDKNIKIWG
601: LDFGDCHKSI FAHDDSVMGV KFVRNTHYMF SIGKDRLVKY WDADKFELLL TLGGHHAEIW CFAVSNRGDF LVTGSHDRSM RRWDRTEEPF FLEEEKEKRL
701: EELFESEIDN SAENRHGSEE EITEEGVTGL AKKTTVDVLS AADSIIEALE LAENEKNRIT EYEEETKRGT VPDLAPNVVM LGLSPSEFVL KTISKEKTND
801: LEHVLLPLPF SDALKLLSYM ESWSLIPEKV ELVCRIATIV LQTHHNQLVT TPAARPILSV LRDILHAKVK ESKDTIGYNL AAMDHLKQMM ASRSDAPFRD
901: AKAKLMEIRS QQAKRMEARL DTKTERKRKK KQKRLEDGHG HAWA
101: TLNGHKGAVT ALRYNKAGSM FASGSKDNDV ILWDVVGETG LFRLRGHRDQ VTDLVFLDDG KKLVTASKDK FLRVWDLETQ HCMQIISGHH TEVWSVDVDP
201: EEKYLVTGSA DQELRFYAVK QNMPHVSVLS DSNANGVDAS GDHLTENKWE VLVPFGEIQR QTKDRVASVR FHNSGSLLAC QMAGKTVEIF QVLDETDAKR
301: KAKRRLRRKE KKSSKDGVEN ETEKVDTVTT PTVPDVFKLL QVIRAGRKIS SFSFCPITPK DSLATLALSL NNNSLEFYTL KSSENEKTAT IEHQGHRSDV
401: RSVALSADNT LLMSTSHSEV KIWNPSTGSC LRTIDSGYGI CSLIVPKSKY GIVGTKSGIL EIIDIGSATK VEDVEAHGGT IWSIAPIPDD TGFVTVSADH
501: EVKFWEYQVK KAGQEAKQLT VSNVRSMKMN DDVLAVAISP DAKHIAVALL DSTVKVFYVD SLKFFLSLYG HKLPVMCIDI SSDGALIVTG SQDKNIKIWG
601: LDFGDCHKSI FAHDDSVMGV KFVRNTHYMF SIGKDRLVKY WDADKFELLL TLGGHHAEIW CFAVSNRGDF LVTGSHDRSM RRWDRTEEPF FLEEEKEKRL
701: EELFESEIDN SAENRHGSEE EITEEGVTGL AKKTTVDVLS AADSIIEALE LAENEKNRIT EYEEETKRGT VPDLAPNVVM LGLSPSEFVL KTISKEKTND
801: LEHVLLPLPF SDALKLLSYM ESWSLIPEKV ELVCRIATIV LQTHHNQLVT TPAARPILSV LRDILHAKVK ESKDTIGYNL AAMDHLKQMM ASRSDAPFRD
901: AKAKLMEIRS QQAKRMEARL DTKTERKRKK KQKRLEDGHG HAWA
001: MVKAYQRYDA ATSFGVISSV DSNIAYDSTG KYVLAPALEK VGIWHVRQGV CSKTLTPSSS RGGPSLAVTS IASSASSLVA VGYADGSIRI WDTEKGTCEV
101: NFNSHKGAVT ALRYNKVGSM LASGSKDNDI ILWDVVGESG LFRLRGHRDQ VTDLVFLDGG KKLVSSSKDK FLRVWDLETQ HCMQIVSGHH SEVWSVDTDP
201: EERYVVTGSA DQELRFYAVK EYSSNGSLVS DSNANEIKAS EEHSTENKWE ILKLFGEIQR QTKDRVARVR FNVSGKLLAC QMAGKTIEIF RVLDEAEAKQ
301: KAKRRLRRKE KKSSKVGDEN STANGEASAK IELADAVSSP TVLDVFKLLQ VIRAGRKISS FSFCPTAPKE SLGTLALSLN NNSLEFYSLK SSENAKTVTI
401: EHQGHRSDVR SVTLSEDNTL LMSTSHSEVK IWNPSTGSCL RTIDSGYGLC SLIVPQNKYG IVGTKSGVLE IIDIGSATKV EEVKAHGGTI WSITPIPNDS
501: GFVTVSADHE VKFWEYQVKQ KSGKATKKLT VSNVKSMKMN DDVLAVAISP DAKHIAVALL DSTVKVFYMD SLKFYLSLYG HKLPVMCIDI SSDGELIVTG
601: SQDKNLKIWG LDFGDCHKSI FAHGDSVMGV KFVRNTHYLF SIGKDRLVKY WDADKFEHLL TLEGHHAEIW CLAISNRGDF LVTGSHDRSM RRWDRSEEPF
701: FLEEEKEKRL EELFESEIDN AADDRHGPME EIPEEGVAAL AGKKTIDVLS AADSIIDALE VAEDETKRHA AYEEEKTKGK VPEYLPNAVM FGLSPSEYVL
801: RAISNVRTND LEQTLLALPF SDSLKFLCYM KDWSLIPEKV ELVSRIATII LQTHHNQLVT TPSARPILSV LRDILYSEIK ACKDTIGFNL AAMDHVKQMM
901: DARSDAPFKD AKAKLLEIRS QQAKRMASRG DTKMEKKRKK KQKKLEEGQH GHALF
101: NFNSHKGAVT ALRYNKVGSM LASGSKDNDI ILWDVVGESG LFRLRGHRDQ VTDLVFLDGG KKLVSSSKDK FLRVWDLETQ HCMQIVSGHH SEVWSVDTDP
201: EERYVVTGSA DQELRFYAVK EYSSNGSLVS DSNANEIKAS EEHSTENKWE ILKLFGEIQR QTKDRVARVR FNVSGKLLAC QMAGKTIEIF RVLDEAEAKQ
301: KAKRRLRRKE KKSSKVGDEN STANGEASAK IELADAVSSP TVLDVFKLLQ VIRAGRKISS FSFCPTAPKE SLGTLALSLN NNSLEFYSLK SSENAKTVTI
401: EHQGHRSDVR SVTLSEDNTL LMSTSHSEVK IWNPSTGSCL RTIDSGYGLC SLIVPQNKYG IVGTKSGVLE IIDIGSATKV EEVKAHGGTI WSITPIPNDS
501: GFVTVSADHE VKFWEYQVKQ KSGKATKKLT VSNVKSMKMN DDVLAVAISP DAKHIAVALL DSTVKVFYMD SLKFYLSLYG HKLPVMCIDI SSDGELIVTG
601: SQDKNLKIWG LDFGDCHKSI FAHGDSVMGV KFVRNTHYLF SIGKDRLVKY WDADKFEHLL TLEGHHAEIW CLAISNRGDF LVTGSHDRSM RRWDRSEEPF
701: FLEEEKEKRL EELFESEIDN AADDRHGPME EIPEEGVAAL AGKKTIDVLS AADSIIDALE VAEDETKRHA AYEEEKTKGK VPEYLPNAVM FGLSPSEYVL
801: RAISNVRTND LEQTLLALPF SDSLKFLCYM KDWSLIPEKV ELVSRIATII LQTHHNQLVT TPSARPILSV LRDILYSEIK ACKDTIGFNL AAMDHVKQMM
901: DARSDAPFKD AKAKLLEIRS QQAKRMASRG DTKMEKKRKK KQKKLEEGQH GHALF
Arabidopsis Description
Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LVF2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.