Factsheet for Bra014107.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra038459.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26060.1	Bra038459.1-P	AT4G16440.1	23104832

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41854	Canola	cytosol	77.73	90.44
AT2G26060.1	Thale cress	cytosol	37.76	67.9
Bra007771.1-P	Field mustard	cytosol	36.49	66.76
VIT_08s0007g03360.t01	Wine grape	cytosol	32.23	59.3
PGSC0003DMT400043378	Potato	cytosol	24.17	56.25
KRH67917	Soybean	cytosol	30.17	55.69
Solyc09g074400.2.1	Tomato	cytosol	29.7	53.56
GSMUA_Achr5P26190_001	Banana	cytosol	29.38	53.45
EER98280	Sorghum	cytosol, nucleus, plastid	27.49	50.43
HORVU7Hr1G101230.1	Barley	cytosol	26.86	50.3
Zm00001d019299_P001	Maize	cytosol	27.49	49.86
TraesCS7D01G435400.1	Wheat	cytosol	27.17	49.14
TraesCS7B01G346200.1	Wheat	cytosol, nucleus, plastid	27.17	49.14
TraesCS7A01G446500.1	Wheat	cytosol	27.01	48.86
Os07t0252000-01	Rice	cytosol	27.01	48.44
KRH33352	Soybean	plastid	19.27	48.03
TraesCS7B01G346100.1	Wheat	cytosol	26.38	47.71
TraesCS7A01G446400.2	Wheat	cytosol	25.91	47.26
TraesCS7D01G435500.1	Wheat	cytosol	25.91	46.99
CDX77335	Canola	cytosol	29.07	43.6
Solyc09g009410.2.1	Tomato	cytosol, nucleus	20.22	36.78
Bra011139.1-P	Field mustard	cytosol	8.37	16.51
Bra037118.1-P	Field mustard	cytosol	13.43	13.89
Bra004625.1-P	Field mustard	nucleus	9.95	12.88
Bra016929.1-P	Field mustard	nucleus, plastid	10.43	12.11
Bra036534.1-P	Field mustard	nucleus	12.01	11.38
Bra020485.1-P	Field mustard	nucleus	11.85	11.26
Bra010317.1-P	Field mustard	cytosol	3.48	9.87
Bra039543.1-P	Field mustard	nucleus	10.9	7.31
Bra023582.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	9.79	7.14
Bra008598.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	9.79	7.14

Protein Annotations

Gene3D:2.130.10.10	Gene3D:3.50.50.60	MapMan:7.11.3.2.1	EnsemblPlantsGene:Bra014107	EnsemblPlants:Bra014107.1	EnsemblPlants:Bra014107.1-P
InterPro:CIAO1/Cia1	InterPro:FAD/NAD-bd_sf	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016226	GO:GO:0097361	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR036188
UniProt:M4DC94	HAMAP:MF_03037	PFAM:PF00400	PFAM:PF13450	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19920	SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF51905
TMHMM:TMhelix	UniParc:UPI0002546908	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

AT2G26060 (E=4e-080) emb1345 | emb1345 (embryo defective 1345); nucleotide binding

Coordinates

chrA08:-:3418656..3423273

Molecular Weight (calculated)

69983.6 Da

IEP (calculated)

6.232

GRAVY (calculated)

-0.055

Length

633 amino acids

Sequence
(BLAST)

001: MDKKISFTDD LPDGTISALL QKQDNVVQSS GIVIGSGISG LAAARNLYEA STNVTVLKSS DRIGGRSTLI TPLVVLLHGV SNDNPLAPII RRLGVTLYQT
101: SGEHSILFDH DLESKKLDRS AASLRRNQCV NHNVTNVVKY RVELLVDDGK NYAIFLVFDK EMLKLAKQDA AALLLDEVNG GVGKKLKAEL GGKDLDFHIR
201: VTPYNFSPDH RTFTISAISD SFNTEGNVGK HPLPASVSNT STIDVKEGGA YTPMDLMEKL ELVELPKLEG HTDRVWNVFW NPVSTLPILA SCSGNNTVRI
301: WEHNSLSHSW SCKTVLEETH TRTVRSCAWS PSGKLLATAS FDGTTAIWQN FGDEFECISN LEGHENKVKI VSWNVAGSYL ATCSRDKSVW IWEVLGGANE
401: YDCAAVLNGP TQDVKMVQWH PTMNVLFSCS FDNTINGHSS TVWAISFNAA GDKTVTCSDD LTLKIWETDI AMMHSGEAYA YCYISVQLVL ICLEFAGIIF
501: VHSLVIMIVP YIQLTGQGTT LLRVEQAMML YDCLWTATMT VKKTSPKNLL QKPKSFFFIS VWALATSFHI YTSNVVCMCN QADRPSYILL LKKENAHDMD
601: VNSVQWSPGE ENRLLASASD DGMVKIWQLA TKQ

Best Arabidopsis Sequence Match ( AT2G26060.1 )
(BLAST)

001: MDLMEKNLEL VEIQKLEGHT DRVWSVAWNP VSSHADGVSP ILASCSGDNT VRIWEQSSLS RSWTCKTVLE ETHTRTVRSC AWSPSGQLLA TASFDGTTGI
101: WKNYGSEFEC ISTLEGHENE VKSVSWNASG SCLATCSRDK SVWIWEVLEG NEYDCAAVLT GHTQDVKMVQ WHPTMDVLFS CSYDNTIKVW WSEDDDGEYQ
201: CVQTLGESNN GHSSTVWSIS FNAAGDKMVT CSDDLTLKIW GTDIAKMQSG EEYAPWIHLC TLSGYHDRTI YSAHWSRDDI IASGAGDNAI RLFVDSKHDS
301: VDGPSYNLLL KKNKAHENDV NSVQWSPGEG NRLLASASDD GMVKIWQLAT KP

Arabidopsis Description

CIA1Protein CIA1 [Source:UniProtKB/Swiss-Prot;Acc:O80990]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.