Factsheet for VIT_08s0007g03360.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0508g00020.t01
VIT_00s1693g00010.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26060.1	VIT_00s0508g00020.t01	AT4G16440.1	23104832
AT2G26060.1	VIT_00s1693g00010.t01	AT4G16440.1	23104832

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67917	Soybean	cytosol	77.91	78.13
PGSC0003DMT400043378	Potato	cytosol	60.76	76.84
Solyc09g074400.2.1	Tomato	cytosol	76.16	74.64
GSMUA_Achr5P26190_001	Banana	cytosol	75.29	74.43
CDX76728	Canola	cytosol	73.84	73.41
Bra007771.1-P	Field mustard	cytosol	73.26	72.83
CDY11502	Canola	cytosol	73.26	72.83
AT2G26060.1	Thale cress	cytosol	74.42	72.73
Zm00001d019299_P001	Maize	cytosol	69.77	68.77
HORVU7Hr1G101230.1	Barley	cytosol	67.44	68.64
EER98280	Sorghum	cytosol, nucleus, plastid	67.44	67.25
Os07t0252000-01	Rice	cytosol	68.9	67.14
TraesCS7B01G346200.1	Wheat	cytosol, nucleus, plastid	67.73	66.57
TraesCS7D01G435400.1	Wheat	cytosol	67.44	66.29
TraesCS7A01G446500.1	Wheat	cytosol	67.44	66.29
AT4G32990.1	Thale cress	cytosol	61.63	64.63
TraesCS7D01G435500.1	Wheat	cytosol	63.08	62.18
TraesCS7B01G346100.1	Wheat	cytosol	63.08	62.0
TraesCS7A01G446400.2	Wheat	cytosol	62.5	61.96
KRH33352	Soybean	plastid	42.44	57.48
Solyc09g009410.2.1	Tomato	cytosol, nucleus	50.58	50.0
CDY41854	Canola	cytosol	66.86	42.28
CDX77335	Canola	cytosol	41.28	33.65
Bra014107.1-P	Field mustard	cytosol, peroxisome, plastid	59.3	32.23
VIT_18s0001g09610.t01	Wine grape	cytosol	12.5	19.63
VIT_13s0084g00760.t01	Wine grape	plastid	6.1	19.09
VIT_11s0016g01730.t01	Wine grape	cytosol	17.73	19.0
VIT_07s0129g00690.t01	Wine grape	nucleus	26.74	15.41
VIT_18s0001g09600.t01	Wine grape	cytosol	22.67	14.26
VIT_08s0007g05930.t01	Wine grape	nucleus	22.38	11.68
VIT_04s0008g05780.t01	Wine grape	nucleus	21.22	10.8
VIT_16s0039g01690.t01	Wine grape	cytosol	21.51	8.22
VIT_08s0007g04690.t01	Wine grape	nucleus	22.67	8.19
VIT_00s0214g00020.t01	Wine grape	mitochondrion, plastid	0.29	0.69

Protein Annotations

EntrezGene:100256192	wikigene:100256192	Gene3D:2.130.10.10	MapMan:7.11.3.2.1	ProteinID:CBI30292	ProteinID:CBI30292.3
InterPro:CIAO1/Cia1	UniProt:D7TJ66	EMBL:FN595991	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016226
GO:GO:0097361	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100256192	wikigene:LOC100256192
HAMAP:MF_03037	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19920	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00015C9FC6	ArrayExpress:VIT_08s0007g03360	EnsemblPlantsGene:VIT_08s0007g03360
EnsemblPlants:VIT_08s0007g03360.t01	unigene:Vvi.23930	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	RefSeq:XP_002282694	RefSeq:XP_002282694.1	SEG:seg	:	:

Description

Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog [Source:UniProtKB/TrEMBL;Acc:D7TJ66]

Coordinates

chr8:+:17323066..17332873

Molecular Weight (calculated)

38394.5 Da

IEP (calculated)

4.475

GRAVY (calculated)

-0.352

Length

344 amino acids

Sequence
(BLAST)

001: MDFSEEGLEL KEIQRLEGHN DKVWSLAWNP TSTLLASCSG DKTVRIWQRS PSTSSWHCKA VLEETHTRTV RSCAWSPSGK LLATASFDAT TAIWELIGDD
101: FECVSTLEGH ENEVKSVSWN ASGSLLATCS RDKSVWIWEV QPGNEFECVS VLQGHTQDVK MVQWHPIMDV LFSCSYDNTV KIWAEDGDSD DWHCVQTLGE
201: SNNGHTSTVW ALSFNPEGDK MVTCSDDLTV KIWDTDSITM QAGEGYAPWK HLCTLSGYHD RTIFSAHWSR EGIIATGAAD DAIRFFVESK DGLVDGPLYK
301: LMLKKEQAHD MDINSVQWSS GENRLLASAS DDGTIKIWEL ASIT

Best Arabidopsis Sequence Match ( AT2G26060.1 )
(BLAST)

001: MDLMEKNLEL VEIQKLEGHT DRVWSVAWNP VSSHADGVSP ILASCSGDNT VRIWEQSSLS RSWTCKTVLE ETHTRTVRSC AWSPSGQLLA TASFDGTTGI
101: WKNYGSEFEC ISTLEGHENE VKSVSWNASG SCLATCSRDK SVWIWEVLEG NEYDCAAVLT GHTQDVKMVQ WHPTMDVLFS CSYDNTIKVW WSEDDDGEYQ
201: CVQTLGESNN GHSSTVWSIS FNAAGDKMVT CSDDLTLKIW GTDIAKMQSG EEYAPWIHLC TLSGYHDRTI YSAHWSRDDI IASGAGDNAI RLFVDSKHDS
301: VDGPSYNLLL KKNKAHENDV NSVQWSPGEG NRLLASASDD GMVKIWQLAT KP

Arabidopsis Description

CIA1Protein CIA1 [Source:UniProtKB/Swiss-Prot;Acc:O80990]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.