Factsheet for VIT_00s0508g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1693g00010.t01	Wine grape	cytosol	15.27	83.91
KRH01973	Soybean	cytosol	75.94	76.58
KRH51180	Soybean	cytosol	75.52	76.16
PGSC0003DMT400065476	Potato	cytosol	73.22	74.0
Solyc08g065990.2.1	Tomato	cytosol	73.01	73.94
CDY34469	Canola	cytosol	70.29	71.95
GSMUA_Achr4P03650_001	Banana	cytosol	71.13	71.88
CDY32243	Canola	cytosol	69.87	71.52
GSMUA_Achr3P29280_001	Banana	cytosol	70.29	71.34
TraesCS5A01G387500.1	Wheat	cytosol	69.87	71.06
AT4G16440.1	Thale cress	cytosol	70.29	70.89
TraesCS5B01G392600.1	Wheat	cytosol, plastid	69.67	70.85
TraesCS5D01G397400.1	Wheat	cytosol, plastid	69.46	70.64
TraesCS5B01G053000.1	Wheat	cytosol, plastid	69.46	70.64
TraesCS5A01G047900.1	Wheat	cytosol, plastid	62.55	69.86
KXG37554	Sorghum	cytosol, plastid	67.36	68.37
Zm00001d034012_P001	Maize	cytosol, plastid	67.36	68.37
Bra038459.1-P	Field mustard	cytosol	70.08	68.23
HORVU5Hr1G094840.5	Barley	mitochondrion, plastid	68.83	67.01
Os03t0748700-01	Rice	plasma membrane	66.53	66.81
Zm00001d013272_P001	Maize	cytosol	66.95	65.57

Protein Annotations

EntrezGene:100267779	wikigene:100267779	Gene3D:3.40.50.1780	Gene3D:3.40.950.20	MapMan:7.11.3.2.4	ProteinID:CBI38438
ProteinID:CBI38438.3	UniProt:D7U6R8	EMBL:FN596540	InterPro:Fe_hydrogenase	InterPro:Fe_hydrogenase_lsu_C	InterPro:Fe_hydrogenase_ssu
GO:GO:0003674	GO:GO:0003824	GO:GO:0003954	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0051536	GO:GO:0055114	EntrezGene:LOC100267779	wikigene:LOC100267779	PFAM:PF02256	PFAM:PF02906
PANTHER:PTHR11615	PANTHER:PTHR11615:SF6	SMART:SM00902	SUPFAM:SSF53920	TIGR:TC58146	TIGR:TC67458
UniParc:UPI0001BE4B87	ArrayExpress:VIT_00s0508g00020	EnsemblPlantsGene:VIT_00s0508g00020	EnsemblPlants:VIT_00s0508g00020.t01	unigene:Vvi.12516	unigene:Vvi.18363
RefSeq:XP_003635380	RefSeq:XP_003635380.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrUn:+:30906442..30911769

Molecular Weight (calculated)

52928.8 Da

IEP (calculated)

7.583

GRAVY (calculated)

-0.165

Length

478 amino acids

Sequence
(BLAST)

001: MSEKFSATLR IGDLNDFIAP SQGCVVSLKG LKAAPAKPEK AEVVTGTKSA NTEPVKISLK DCLACSGCIT SAETVMLEKQ SMDEFLFNIN KGKAVIVSLS
101: PQSRASFAIH FGLSPLQVLR KLTTFFKSLG VKAVFDTSCS RDLSLIESCN AFISRYKQHH STEDEKCKTS LPMLSSACPG WICYAEKTLG SYILPYISSV
201: KSPQQTIGVT IKNYLCQKMG FRPDEVYHVS VMPCYDKKLE AARDDFVFEV DSPGGVHENT GLRITEVDSV LTSGEVLELI QLKSVDFKNL EESPLDRLLT
301: NVNEEGHLYG VQGSSGGYAD TIFRYAAKTL FGRELKGPLD FKTVRNSDFR EVTLEIEGQT MLKFALCYGF RNLQNIVRKI KIGKCDYHFL EVMACPSGCL
401: NGGGQIKPKA GQSAKDLIQS LEAIYMENVV VADPFKNPIV KGLYDEWLEQ PGSEKAKRLI HTEYHPVVKS ITSQLHNW

Best Arabidopsis Sequence Match ( AT4G16440.1 )
(BLAST)

001: MSEKFSPTLR LGDLNDFIAP SQACVISLKD SKPIVKKSDR PQVVIAPKQQ LEPVKISLKD CLACSGCITS AETVMLEKQS LDEFLSALSK GKDVVVSVSP
101: QSRASLAVHY DISPLQVFKK LTTFLKSLGV KAVFDTSCSR DLVLIESCNE FVSRYKQANS DDGENSQSPL PVLSSACPGW ICYAEKQLGS YVLPYVSSVK
201: SPQQAIGAAI KHHLCQALGL RLHEVYHVTV MPCYDKKLEA ARDDFVFDDG TQDNGDLKLT EVDSVLTTGE IMDLIKLKGV DFKDLEESPL DRVLTNVTEE
301: GDLYGVAGSS GGYAETIFRH AAKALFGQTI EGPLEFKTLR NSDFREVTLQ LEGKTVLKFA LCYGFQNLQN IVRRVKTRKC DYQYVEIMAC PAGCLNGGGQ
401: IKPKTGQSQK ELIHSLEATY MNDTTLNTDP YQNPTAKRLF EEWLKEPGSN EAKKYLHTQY HPVVKSVTSQ LNNW

Arabidopsis Description

NAR1NAR1 [Source:UniProtKB/TrEMBL;Acc:A0A178V110]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.