CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34469	Canola	cytosol	98.29	98.29
Bra038459.1-P	Field mustard	cytosol	98.93	94.09
AT4G16440.1	Thale cress	cytosol	89.72	88.4
VIT_00s0508g00020.t01	Wine grape	cytosol	71.52	69.87
KRH51180	Soybean	cytosol	70.02	68.99
KRH01973	Soybean	cytosol	69.59	68.57
PGSC0003DMT400065476	Potato	cytosol	68.52	67.65
TraesCS5B01G392600.1	Wheat	cytosol, plastid	67.45	67.02
Solyc08g065990.2.1	Tomato	cytosol	67.67	66.95
TraesCS5A01G387500.1	Wheat	cytosol	67.24	66.81
TraesCS5D01G397400.1	Wheat	cytosol, plastid	67.24	66.81
TraesCS5B01G053000.1	Wheat	cytosol, plastid	67.02	66.6
GSMUA_Achr4P03650_001	Banana	cytosol	67.02	66.17
TraesCS5A01G047900.1	Wheat	cytosol, plastid	59.96	65.42
KXG37554	Sorghum	cytosol, plastid	65.74	65.18
GSMUA_Achr3P29280_001	Banana	cytosol	65.31	64.76
Zm00001d034012_P001	Maize	cytosol, plastid	65.1	64.54
Os03t0748700-01	Rice	plasma membrane	65.52	64.29
HORVU5Hr1G094840.5	Barley	mitochondrion, plastid	66.81	63.54
Zm00001d013272_P001	Maize	cytosol	65.1	62.3
VIT_00s1693g00010.t01	Wine grape	cytosol	10.92	58.62

Protein Annotations

EnsemblPlants:CDY32243	EnsemblPlantsGene:GSBRNA2T00051683001	Gene3D:3.40.50.1780	Gene3D:3.40.950.20	InterPro:Fe_hydrogenase	InterPro:Fe_hydrogenase_lsu_C
InterPro:Fe_hydrogenase_ssu	PANTHER:PTHR11615	PANTHER:PTHR11615:SF6	PFAM:PF02256	PFAM:PF02906	ProteinID:CDY32243
ProteinID:CDY32243.1	SMART:SM00902	SUPFAM:SSF53920	UniParc:UPI0004EDF86E	UniProt:A0A078H611	MapMan:7.11.3.2.4

Description

BnaA01g17410DBnaA01g17410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H611]

Coordinates

chrLK032290:-:222507..225092

Molecular Weight (calculated)

51534.9 Da

IEP (calculated)

6.720

GRAVY (calculated)

-0.198

Length

467 amino acids

Sequence
(BLAST)

001: MSDKFSPTLR LGDLNDFIAP SQACVISLKG SKKPLDKKPD RPQVVLTPKQ QLEPVKISLK DCLACSGCIT SAETVMLEKQ SLDEFLSALT KGKDVIVSLS
101: PQSRASIAVH YDISPLQVFK KLTTFLKSLG VKAVFDTSCS RDLVLIEACN EFVNRFKQAS SDDGENAQSP LPVLSSACPG WICYAEKTLG SFVLPYVSSV
201: KSPQQAIGAA IKHHLCQALG LRLEEIYHVT VMPCYDKKLE AARDDFVFGD NLTEVDSVLT TGEILDLLKL KGVDFKDLEE SPLDRLLTNV TEEGHLYGVA
301: GSSGGYAETI FRHAAKALFG HTIEGPLEFK TLRNSDFREL TLELEGKTVL KFATCYGFQN LQNIVRKLKT RKCDYQYVEI MACPAGCLNG GGQIKPKTGE
401: TPKELINSLE ATYMNDTALS TDPFQNPIAK RLSDEWLHEP GSHEAKKYLH TQYHAVVKSV TAQLNNW

Best Arabidopsis Sequence Match ( AT4G16440.1 )
(BLAST)

001: MSEKFSPTLR LGDLNDFIAP SQACVISLKD SKPIVKKSDR PQVVIAPKQQ LEPVKISLKD CLACSGCITS AETVMLEKQS LDEFLSALSK GKDVVVSVSP
101: QSRASLAVHY DISPLQVFKK LTTFLKSLGV KAVFDTSCSR DLVLIESCNE FVSRYKQANS DDGENSQSPL PVLSSACPGW ICYAEKQLGS YVLPYVSSVK
201: SPQQAIGAAI KHHLCQALGL RLHEVYHVTV MPCYDKKLEA ARDDFVFDDG TQDNGDLKLT EVDSVLTTGE IMDLIKLKGV DFKDLEESPL DRVLTNVTEE
301: GDLYGVAGSS GGYAETIFRH AAKALFGQTI EGPLEFKTLR NSDFREVTLQ LEGKTVLKFA LCYGFQNLQN IVRRVKTRKC DYQYVEIMAC PAGCLNGGGQ
401: IKPKTGQSQK ELIHSLEATY MNDTTLNTDP YQNPTAKRLF EEWLKEPGSN EAKKYLHTQY HPVVKSVTSQ LNNW

Arabidopsis Description

NAR1NAR1 [Source:UniProtKB/TrEMBL;Acc:A0A178V110]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.