Factsheet for Bra038459.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32243	Canola	cytosol	94.09	98.93
CDY34469	Canola	cytosol	93.89	98.72
AT4G16440.1	Thale cress	cytosol	85.13	88.19
VIT_00s0508g00020.t01	Wine grape	cytosol	68.23	70.08
KRH51180	Soybean	cytosol	66.8	69.2
KRH01973	Soybean	cytosol	66.4	68.78
PGSC0003DMT400065476	Potato	cytosol	65.38	67.86
Solyc08g065990.2.1	Tomato	cytosol	64.56	67.16
TraesCS5B01G392600.1	Wheat	cytosol, plastid	64.15	67.02
TraesCS5A01G387500.1	Wheat	cytosol	63.95	66.81
TraesCS5D01G397400.1	Wheat	cytosol, plastid	63.95	66.81
GSMUA_Achr4P03650_001	Banana	cytosol	64.36	66.81
TraesCS5B01G053000.1	Wheat	cytosol, plastid	63.75	66.6
TraesCS5A01G047900.1	Wheat	cytosol, plastid	57.03	65.42
KXG37554	Sorghum	cytosol, plastid	62.73	65.39
GSMUA_Achr3P29280_001	Banana	cytosol	62.32	64.97
Zm00001d034012_P001	Maize	cytosol, plastid	62.12	64.76
Os03t0748700-01	Rice	plasma membrane	62.53	64.5
HORVU5Hr1G094840.5	Barley	mitochondrion, plastid	63.54	63.54
Zm00001d013272_P001	Maize	cytosol	62.12	62.5
VIT_00s1693g00010.t01	Wine grape	cytosol	10.39	58.62

Protein Annotations

Gene3D:3.40.50.1780	Gene3D:3.40.950.20	MapMan:7.11.3.2.4	EnsemblPlantsGene:Bra038459	EnsemblPlants:Bra038459.1	EnsemblPlants:Bra038459.1-P
InterPro:Fe_hydrogenase	InterPro:Fe_hydrogenase_lsu_C	InterPro:Fe_hydrogenase_ssu	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0009628	GO:GO:0070482
UniProt:M4FBJ3	PFAM:PF02256	PFAM:PF02906	PANTHER:PTHR11615	PANTHER:PTHR11615:SF6	SMART:SM00902
SUPFAM:SSF53920	UniParc:UPI00025446DF	:	:	:	:

Description

AT4G16440 (E=3e-113) | ferredoxin hydrogenase

Coordinates

chrA01:+:11095352..11097509

Molecular Weight (calculated)

54258.2 Da

IEP (calculated)

6.660

GRAVY (calculated)

-0.143

Length

491 amino acids

Sequence
(BLAST)

001: MSDKFSPTLR LGDLNDFIAP SQACVISLKG SKKPLDKKPD RPQVVLTPKQ QLEPVKISLK DCLACSGCIT SAETVMLEKQ SLDEFLSALT KGKDVIVSLS
101: PQSRASIAVH YDISPLQVFK KLTTFLKSLG VKAVFDTSCS RDLVLIEACN EFVNRFKQAS SDDGENAQSP LPILSSACPG WICYAEKTLG SFVLPYVSSV
201: KSPQQAIGAA IKHHLCQALG LRYSLETLVI LSYIVGYIVD PSIGTRLEEI YHVTVMPCYD KKLEAARDDF VFGDNLTEVD SVLTTGEILD LLKLKGVDFK
301: DLEESPLDRL LTNVTEEGHL YGVAGSSGGY AETIFRHAAK ALFGHTIEGP LEFKTLRNSD FRELTLELEG KTVLKFATCY GFQNLQNIVR KLKTRKCDYQ
401: YVEIMACPAG CLNGGGQIKP KTGQTPKELI NSLEATYMND TALSTDPFQN PIAKRLYDEW LHEPSSSEAK KYLHTQYHAV VKSVTAQLNN W

Best Arabidopsis Sequence Match ( AT4G16440.1 )
(BLAST)

001: MSEKFSPTLR LGDLNDFIAP SQACVISLKD SKPIVKKSDR PQVVIAPKQQ LEPVKISLKD CLACSGCITS AETVMLEKQS LDEFLSALSK GKDVVVSVSP
101: QSRASLAVHY DISPLQVFKK LTTFLKSLGV KAVFDTSCSR DLVLIESCNE FVSRYKQANS DDGENSQSPL PVLSSACPGW ICYAEKQLGS YVLPYVSSVK
201: SPQQAIGAAI KHHLCQALGL RLHEVYHVTV MPCYDKKLEA ARDDFVFDDG TQDNGDLKLT EVDSVLTTGE IMDLIKLKGV DFKDLEESPL DRVLTNVTEE
301: GDLYGVAGSS GGYAETIFRH AAKALFGQTI EGPLEFKTLR NSDFREVTLQ LEGKTVLKFA LCYGFQNLQN IVRRVKTRKC DYQYVEIMAC PAGCLNGGGQ
401: IKPKTGQSQK ELIHSLEATY MNDTTLNTDP YQNPTAKRLF EEWLKEPGSN EAKKYLHTQY HPVVKSVTSQ LNNW

Arabidopsis Description

NAR1NAR1 [Source:UniProtKB/TrEMBL;Acc:A0A178V110]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.