CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32243	Canola	cytosol	98.29	98.29
Bra038459.1-P	Field mustard	cytosol	98.72	93.89
AT4G16440.1	Thale cress	cytosol	88.87	87.55
VIT_00s0508g00020.t01	Wine grape	cytosol	71.95	70.29
KRH51180	Soybean	cytosol	70.24	69.2
KRH01973	Soybean	cytosol	70.02	68.99
PGSC0003DMT400065476	Potato	cytosol	68.52	67.65
Solyc08g065990.2.1	Tomato	cytosol	67.88	67.16
TraesCS5B01G392600.1	Wheat	cytosol, plastid	67.45	67.02
TraesCS5A01G387500.1	Wheat	cytosol	67.24	66.81
TraesCS5D01G397400.1	Wheat	cytosol, plastid	67.24	66.81
GSMUA_Achr4P03650_001	Banana	cytosol	67.45	66.6
TraesCS5B01G053000.1	Wheat	cytosol, plastid	67.02	66.6
TraesCS5A01G047900.1	Wheat	cytosol, plastid	60.17	65.65
GSMUA_Achr3P29280_001	Banana	cytosol	65.74	65.18
KXG37554	Sorghum	cytosol, plastid	65.52	64.97
Zm00001d034012_P001	Maize	cytosol, plastid	64.88	64.33
Os03t0748700-01	Rice	plasma membrane	65.31	64.08
HORVU5Hr1G094840.5	Barley	mitochondrion, plastid	66.81	63.54
Zm00001d013272_P001	Maize	cytosol	64.88	62.09
VIT_00s1693g00010.t01	Wine grape	cytosol	11.13	59.77

Protein Annotations

EnsemblPlants:CDY34469	EnsemblPlantsGene:GSBRNA2T00056576001	Gene3D:3.40.50.1780	Gene3D:3.40.950.20	InterPro:Fe_hydrogenase	InterPro:Fe_hydrogenase_lsu_C
InterPro:Fe_hydrogenase_ssu	PANTHER:PTHR11615	PANTHER:PTHR11615:SF6	PFAM:PF02256	PFAM:PF02906	ProteinID:CDY34469
ProteinID:CDY34469.1	SMART:SM00902	SUPFAM:SSF53920	UniParc:UPI0004EEB219	UniProt:A0A078HAG5	MapMan:7.11.3.2.4

Description

BnaC01g21640DBnaC01g21640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HAG5]

Coordinates

chrLK032334:-:345198..347581

Molecular Weight (calculated)

51474.8 Da

IEP (calculated)

6.822

GRAVY (calculated)

-0.180

Length

467 amino acids

Sequence
(BLAST)

001: MSDKFSPTLR LGDLNDFIAP SQACVVSLKG SKKPLDKKPD RPQVVLTPKQ QLEPVKISLK DCLACSGCIT SAETVMLEKQ SLDEFLSALT KGKDVIVSLS
101: PQSRASIAVH YDISPLQVFK KLTTFLKSLG VKAVFDTSCS RDLVLIEACN EFVNRFKQAS SDDGENAQSP LPILSSACPG WICYAEKTLG SFVLPYVSSV
201: KSPQQAIGTA IKHHLCQALG LRLEEIYHVT VMPCYDKKLE AARDDFVFGD NLTEVDSVLT TGEILDLLKL KGVDFKDLEE SPLDRLLTNV TEEGHLYGVA
301: GSSGGYAETI FRHAATALFG HTIAGPLEFK TLRNSDFREL TLELEGKTVL KFATCYGFQN LQNIVRKLKT RKCDYQYVEI MACPAGCLNG GGQIKPKTGQ
401: TPKELINSLE ATYMNDTALS TDPFQNPIAK RLYDEWLHEP GSGEAKKYLH TQYHAVVKSV TAQLNNW

Best Arabidopsis Sequence Match ( AT4G16440.1 )
(BLAST)

001: MSEKFSPTLR LGDLNDFIAP SQACVISLKD SKPIVKKSDR PQVVIAPKQQ LEPVKISLKD CLACSGCITS AETVMLEKQS LDEFLSALSK GKDVVVSVSP
101: QSRASLAVHY DISPLQVFKK LTTFLKSLGV KAVFDTSCSR DLVLIESCNE FVSRYKQANS DDGENSQSPL PVLSSACPGW ICYAEKQLGS YVLPYVSSVK
201: SPQQAIGAAI KHHLCQALGL RLHEVYHVTV MPCYDKKLEA ARDDFVFDDG TQDNGDLKLT EVDSVLTTGE IMDLIKLKGV DFKDLEESPL DRVLTNVTEE
301: GDLYGVAGSS GGYAETIFRH AAKALFGQTI EGPLEFKTLR NSDFREVTLQ LEGKTVLKFA LCYGFQNLQN IVRRVKTRKC DYQYVEIMAC PAGCLNGGGQ
401: IKPKTGQSQK ELIHSLEATY MNDTTLNTDP YQNPTAKRLF EEWLKEPGSN EAKKYLHTQY HPVVKSVTSQ LNNW

Arabidopsis Description

NAR1NAR1 [Source:UniProtKB/TrEMBL;Acc:A0A178V110]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.