Factsheet for PGSC0003DMT400065476

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g065990.2.1	Tomato	cytosol	96.41	96.61
VIT_00s0508g00020.t01	Wine grape	cytosol	74.0	73.22
KRH51180	Soybean	cytosol	72.09	71.94
KRH01973	Soybean	cytosol	71.46	71.31
GSMUA_Achr4P03650_001	Banana	cytosol	68.92	68.92
CDY32243	Canola	cytosol	67.65	68.52
CDY34469	Canola	cytosol	67.65	68.52
TraesCS5D01G397400.1	Wheat	cytosol, plastid	68.08	68.51
TraesCS5B01G392600.1	Wheat	cytosol, plastid	68.08	68.51
TraesCS5B01G053000.1	Wheat	cytosol, plastid	68.08	68.51
TraesCS5A01G387500.1	Wheat	cytosol	68.08	68.51
AT4G16440.1	Thale cress	cytosol	68.08	67.93
GSMUA_Achr3P29280_001	Banana	cytosol	67.02	67.3
TraesCS5A01G047900.1	Wheat	cytosol, plastid	60.89	67.29
KXG37554	Sorghum	cytosol, plastid	66.81	67.09
Zm00001d034012_P001	Maize	cytosol, plastid	66.38	66.67
Os03t0748700-01	Rice	plasma membrane	65.96	65.55
Bra038459.1-P	Field mustard	cytosol	67.86	65.38
Zm00001d013272_P001	Maize	cytosol	67.23	65.16
HORVU5Hr1G094840.5	Barley	mitochondrion, plastid	67.23	64.77
VIT_00s1693g00010.t01	Wine grape	cytosol	10.36	56.32

Protein Annotations

EnsemblPlants:PGSC0003DMT400065476	EnsemblPlantsGene:PGSC0003DMG400025463	EntrezGene:102598408	Gene3D:3.40.50.1780	Gene3D:3.40.950.20	InterPro:Fe_hydrogenase
InterPro:Fe_hydrogenase_lsu_C	InterPro:Fe_hydrogenase_ssu	PANTHER:PTHR11615	PANTHER:PTHR11615:SF6	PFAM:PF02256	PFAM:PF02906
PGSC:PGSC0003DMG400025463	RefSeq:XP_006355303.1	SMART:SM00902	SUPFAM:SSF53920	UniParc:UPI00029508B1	UniProt:M1CE22
MapMan:7.11.3.2.4	:	:	:	:	:

Description

Narf [Source:PGSC_GENE;Acc:PGSC0003DMG400025463]

Coordinates

chr8:+:37485915..37492368

Molecular Weight (calculated)

52424.9 Da

IEP (calculated)

6.506

GRAVY (calculated)

-0.187

Length

473 amino acids

Sequence
(BLAST)

001: MSQKFSATLR IGDLNDYIAP SQGCVVSLKS NSNRINKSEN VGKAGALSKP VQTEPVKISL KDCLACSGCI TSAETVMLEK QSLDEFLSNL EKGRTTVIVS
101: LSPQSRAALA VHYGLSSLQV FRKLTTLFKS LGVKAIFDTS CSRDLTLIES CNEFMVRYKQ SQCTSSGESK PPLPMISSAC PGWICYAEKT LGSYILPYIS
201: SVKSPQQTIG AVVKNFIWPK LSVRPEDIYH VTVMPCYDKK LEAAREDFVF QVDTDSEKIT EVDSVLTTGE VLDLIQLKAV DFQSLEESPL DKLFTNIDEE
301: GHLYGVHGSS GGYAETIYRH VAKVLLDQEV EGPLAFKTIR NSDFQEVSLE VNDKSVLKFA LCYGFRNLQN VVRKLKMGKC DYHFLEIMAC PSGCLNGGGQ
401: IKPQPGQSGK ELIQLLETAY VENVVVADPF NNPITKGLYS EWLEQPGSEK AKRYLHTEYH PVVKSITSQL QNW

Best Arabidopsis Sequence Match ( AT4G16440.1 )
(BLAST)

001: MSEKFSPTLR LGDLNDFIAP SQACVISLKD SKPIVKKSDR PQVVIAPKQQ LEPVKISLKD CLACSGCITS AETVMLEKQS LDEFLSALSK GKDVVVSVSP
101: QSRASLAVHY DISPLQVFKK LTTFLKSLGV KAVFDTSCSR DLVLIESCNE FVSRYKQANS DDGENSQSPL PVLSSACPGW ICYAEKQLGS YVLPYVSSVK
201: SPQQAIGAAI KHHLCQALGL RLHEVYHVTV MPCYDKKLEA ARDDFVFDDG TQDNGDLKLT EVDSVLTTGE IMDLIKLKGV DFKDLEESPL DRVLTNVTEE
301: GDLYGVAGSS GGYAETIFRH AAKALFGQTI EGPLEFKTLR NSDFREVTLQ LEGKTVLKFA LCYGFQNLQN IVRRVKTRKC DYQYVEIMAC PAGCLNGGGQ
401: IKPKTGQSQK ELIHSLEATY MNDTTLNTDP YQNPTAKRLF EEWLKEPGSN EAKKYLHTQY HPVVKSVTSQ LNNW

Arabidopsis Description

NAR1NAR1 [Source:UniProtKB/TrEMBL;Acc:A0A178V110]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.