Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0748700-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G26060.1 | Os03t0748700-01 | AT4G16440.1 | 23104832 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d019299_P001 | Maize | cytosol | 86.69 | 87.68 |
| HORVU7Hr1G101230.1 | Barley | cytosol | 83.57 | 87.28 |
| EER98280 | Sorghum | cytosol, nucleus, plastid | 84.99 | 86.96 |
| TraesCS7A01G446500.1 | Wheat | cytosol | 84.99 | 85.71 |
| TraesCS7B01G346200.1 | Wheat | cytosol, nucleus, plastid | 84.99 | 85.71 |
| TraesCS7D01G435400.1 | Wheat | cytosol | 84.99 | 85.71 |
| TraesCS7A01G446400.2 | Wheat | cytosol | 79.6 | 80.98 |
| TraesCS7D01G435500.1 | Wheat | cytosol | 79.04 | 79.94 |
| TraesCS7B01G346100.1 | Wheat | cytosol | 79.04 | 79.71 |
| GSMUA_Achr5P26190_001 | Banana | cytosol | 68.84 | 69.83 |
| VIT_08s0007g03360.t01 | Wine grape | cytosol | 67.14 | 68.9 |
| KRH67917 | Soybean | cytosol | 64.59 | 66.47 |
| CDY11502 | Canola | cytosol | 64.59 | 65.9 |
| Bra007771.1-P | Field mustard | cytosol | 64.31 | 65.61 |
| CDX76728 | Canola | cytosol | 64.02 | 65.32 |
| Solyc09g074400.2.1 | Tomato | cytosol | 63.74 | 64.1 |
| PGSC0003DMT400043378 | Potato | cytosol | 49.29 | 63.97 |
| AT2G26060.1 | Thale cress | cytosol | 62.32 | 62.5 |
| AT4G32990.1 | Thale cress | cytosol | 50.71 | 54.57 |
| KRH33352 | Soybean | plastid | 33.71 | 46.85 |
| Solyc09g009410.2.1 | Tomato | cytosol, nucleus | 43.06 | 43.68 |
| CDY41854 | Canola | cytosol | 56.37 | 36.58 |
| CDX77335 | Canola | cytosol | 36.26 | 30.33 |
| Bra014107.1-P | Field mustard | cytosol, peroxisome, plastid | 48.44 | 27.01 |
| Os11t0660300-01 | Rice | cytosol | 16.15 | 17.65 |
| Os03t0355400-00 | Rice | cytosol, nucleus, plastid | 21.53 | 14.5 |
| Os03t0355200-00 | Rice | cytosol, nucleus, plastid | 21.53 | 14.5 |
| Os07t0405100-01 | Rice | cytosol | 20.96 | 13.33 |
| Os06t0649500-01 | Rice | nucleus | 20.68 | 11.16 |
| Os03t0151700-01 | Rice | nucleus | 20.96 | 7.87 |
| Os04t0592700-01 | Rice | nucleus | 19.55 | 7.74 |
| Os07t0205200-02 | Rice | cytosol, nucleus | 2.27 | 3.16 |
Protein Annotations
| Gene3D:2.130.10.10 | EntrezGene:4342847 | MapMan:7.11.3.2.1 | EMBL:AK109741 | ProteinID:BAC84508.1 | ProteinID:BAF21216.1 |
| ProteinID:BAT00848.1 | InterPro:CIAO1/Cia1 | ProteinID:EEE66898.1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016226 |
| GO:GO:0097361 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | HAMAP:MF_03037 | EnsemblPlantsGene:Os07g0252000 |
| EnsemblPlants:Os07t0252000-01 | PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR19920 | UniProt:Q6YVM7 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI00001BF6F7 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | RefSeq:XP_015644761.1 | : |
Description
OsWD40-140WD40 repeat, region domain containing protein. (Os07t0252000-01)
Coordinates
chr7:+:8477420..8482663
Molecular Weight (calculated)
38929.0 Da
IEP (calculated)
4.700
GRAVY (calculated)
-0.432
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMDGGAAAV LREAHRLTGH TDRVWSLAWN PSPGAGAGPV LASCGGDKAV RIWKRAADGA WQCSDVLEDT HNRTVRSCAW SPDGKLLATA SFDSTTAIWE
101: YSGGDFECVA TLEGHENEVK SVSWSASGSL LATCSRDKSV WIWEMQPGNE YECVSVQQGH TQDVKMVQWH PILDVLVSVS YDNSIRVWAD DGDDEWHCVQ
201: TLTEANNCGH SSTVWALSFN QKGDRMVTCS DDHTLKIWDT SADLSQPKTS DNQESWRHLS TLTGYHNRTI FSAHWSSEDI IASGAGDDAI CLFAEDKSSM
301: VEGPSYRLIL KKEKAHDMDI NCVRWCPQDP RMLASASDDG TVKLWELRGN ALD
101: YSGGDFECVA TLEGHENEVK SVSWSASGSL LATCSRDKSV WIWEMQPGNE YECVSVQQGH TQDVKMVQWH PILDVLVSVS YDNSIRVWAD DGDDEWHCVQ
201: TLTEANNCGH SSTVWALSFN QKGDRMVTCS DDHTLKIWDT SADLSQPKTS DNQESWRHLS TLTGYHNRTI FSAHWSSEDI IASGAGDDAI CLFAEDKSSM
301: VEGPSYRLIL KKEKAHDMDI NCVRWCPQDP RMLASASDDG TVKLWELRGN ALD
001: MDLMEKNLEL VEIQKLEGHT DRVWSVAWNP VSSHADGVSP ILASCSGDNT VRIWEQSSLS RSWTCKTVLE ETHTRTVRSC AWSPSGQLLA TASFDGTTGI
101: WKNYGSEFEC ISTLEGHENE VKSVSWNASG SCLATCSRDK SVWIWEVLEG NEYDCAAVLT GHTQDVKMVQ WHPTMDVLFS CSYDNTIKVW WSEDDDGEYQ
201: CVQTLGESNN GHSSTVWSIS FNAAGDKMVT CSDDLTLKIW GTDIAKMQSG EEYAPWIHLC TLSGYHDRTI YSAHWSRDDI IASGAGDNAI RLFVDSKHDS
301: VDGPSYNLLL KKNKAHENDV NSVQWSPGEG NRLLASASDD GMVKIWQLAT KP
101: WKNYGSEFEC ISTLEGHENE VKSVSWNASG SCLATCSRDK SVWIWEVLEG NEYDCAAVLT GHTQDVKMVQ WHPTMDVLFS CSYDNTIKVW WSEDDDGEYQ
201: CVQTLGESNN GHSSTVWSIS FNAAGDKMVT CSDDLTLKIW GTDIAKMQSG EEYAPWIHLC TLSGYHDRTI YSAHWSRDDI IASGAGDNAI RLFVDSKHDS
301: VDGPSYNLLL KKNKAHENDV NSVQWSPGEG NRLLASASDD GMVKIWQLAT KP
Arabidopsis Description
CIA1Protein CIA1 [Source:UniProtKB/Swiss-Prot;Acc:O80990]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.