Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra038459.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G26060.1 | Bra038459.1-P | AT4G16440.1 | 23104832 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11502 | Canola | cytosol | 98.55 | 98.55 |
| CDX76728 | Canola | cytosol | 97.11 | 97.11 |
| AT2G26060.1 | Thale cress | cytosol | 86.42 | 84.94 |
| VIT_08s0007g03360.t01 | Wine grape | cytosol | 72.83 | 73.26 |
| KRH67917 | Soybean | cytosol | 68.5 | 69.1 |
| PGSC0003DMT400043378 | Potato | cytosol | 53.47 | 68.01 |
| GSMUA_Achr5P26190_001 | Banana | cytosol | 68.21 | 67.82 |
| Solyc09g074400.2.1 | Tomato | cytosol | 68.5 | 67.52 |
| EER98280 | Sorghum | cytosol, nucleus, plastid | 65.61 | 65.8 |
| HORVU7Hr1G101230.1 | Barley | cytosol | 63.87 | 65.38 |
| Zm00001d019299_P001 | Maize | cytosol | 65.9 | 65.33 |
| Os07t0252000-01 | Rice | cytosol | 65.61 | 64.31 |
| TraesCS7D01G435400.1 | Wheat | cytosol | 64.16 | 63.43 |
| TraesCS7B01G346200.1 | Wheat | cytosol, nucleus, plastid | 63.87 | 63.14 |
| TraesCS7A01G446500.1 | Wheat | cytosol | 63.29 | 62.57 |
| TraesCS7B01G346100.1 | Wheat | cytosol | 61.56 | 60.86 |
| TraesCS7D01G435500.1 | Wheat | cytosol | 60.98 | 60.46 |
| TraesCS7A01G446400.2 | Wheat | cytosol | 60.12 | 59.94 |
| KRH33352 | Soybean | plastid | 36.71 | 50.0 |
| Solyc09g009410.2.1 | Tomato | cytosol, nucleus | 46.24 | 45.98 |
| Bra014107.1-P | Field mustard | cytosol, peroxisome, plastid | 66.76 | 36.49 |
| Bra011139.1-P | Field mustard | cytosol | 17.63 | 19.0 |
| Bra037118.1-P | Field mustard | cytosol | 27.17 | 15.36 |
| Bra004625.1-P | Field mustard | nucleus | 19.65 | 13.91 |
| Bra016929.1-P | Field mustard | nucleus, plastid | 19.65 | 12.48 |
| Bra010317.1-P | Field mustard | cytosol | 6.94 | 10.76 |
| Bra036534.1-P | Field mustard | nucleus | 20.52 | 10.63 |
| Bra020485.1-P | Field mustard | nucleus | 19.94 | 10.36 |
| Bra023582.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 18.5 | 7.37 |
| Bra008598.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 18.5 | 7.37 |
| Bra039543.1-P | Field mustard | nucleus | 19.36 | 7.1 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:7.11.3.2.1 | EnsemblPlantsGene:Bra007771 | EnsemblPlants:Bra007771.1 | EnsemblPlants:Bra007771.1-P | InterPro:CIAO1/Cia1 |
| InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016226 | GO:GO:0097361 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | UniProt:M4CU77 | HAMAP:MF_03037 | PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19920 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0002542C30 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg |
Description
AT2G26060 (E=3e-173) emb1345 | emb1345 (embryo defective 1345); nucleotide binding
Coordinates
chrA09:-:30805077..30807132
Molecular Weight (calculated)
38542.5 Da
IEP (calculated)
4.344
GRAVY (calculated)
-0.366
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLMEKNLEL IEVQKLEGHT DRVWNAAWNP VSPILASCSG DNSVRIWEQS SLSRSWSCKT VLEETHTRTV RSCSWSPSGK LLATASFDGT TAIWEDLGDE
101: FECISTLEGH ENEVKSVSWN ASGSYLATCS RDKSVWIWEV LGGNEYDCAS VLNGHTQDVK MVLWHPTLDV LFSCSYDNTI KVWWSEDDDG DYQCVQTLDE
201: SSNGHSSTVW AISFNAAGDK MVTCSDDLTL KIWSADISMM HSGEGYAPWT HLCTLSGYHD RTIFSTHWSS DDIIASGAGD DAIGLFVDSK QHDSVNGPSY
301: NLLLKKEKSH EMDINSVQWS PSKESRLLAS ASDDGMVKIW QLETIP
101: FECISTLEGH ENEVKSVSWN ASGSYLATCS RDKSVWIWEV LGGNEYDCAS VLNGHTQDVK MVLWHPTLDV LFSCSYDNTI KVWWSEDDDG DYQCVQTLDE
201: SSNGHSSTVW AISFNAAGDK MVTCSDDLTL KIWSADISMM HSGEGYAPWT HLCTLSGYHD RTIFSTHWSS DDIIASGAGD DAIGLFVDSK QHDSVNGPSY
301: NLLLKKEKSH EMDINSVQWS PSKESRLLAS ASDDGMVKIW QLETIP
001: MDLMEKNLEL VEIQKLEGHT DRVWSVAWNP VSSHADGVSP ILASCSGDNT VRIWEQSSLS RSWTCKTVLE ETHTRTVRSC AWSPSGQLLA TASFDGTTGI
101: WKNYGSEFEC ISTLEGHENE VKSVSWNASG SCLATCSRDK SVWIWEVLEG NEYDCAAVLT GHTQDVKMVQ WHPTMDVLFS CSYDNTIKVW WSEDDDGEYQ
201: CVQTLGESNN GHSSTVWSIS FNAAGDKMVT CSDDLTLKIW GTDIAKMQSG EEYAPWIHLC TLSGYHDRTI YSAHWSRDDI IASGAGDNAI RLFVDSKHDS
301: VDGPSYNLLL KKNKAHENDV NSVQWSPGEG NRLLASASDD GMVKIWQLAT KP
101: WKNYGSEFEC ISTLEGHENE VKSVSWNASG SCLATCSRDK SVWIWEVLEG NEYDCAAVLT GHTQDVKMVQ WHPTMDVLFS CSYDNTIKVW WSEDDDGEYQ
201: CVQTLGESNN GHSSTVWSIS FNAAGDKMVT CSDDLTLKIW GTDIAKMQSG EEYAPWIHLC TLSGYHDRTI YSAHWSRDDI IASGAGDNAI RLFVDSKHDS
301: VDGPSYNLLL KKNKAHENDV NSVQWSPGEG NRLLASASDD GMVKIWQLAT KP
Arabidopsis Description
CIA1Protein CIA1 [Source:UniProtKB/Swiss-Prot;Acc:O80990]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.