Factsheet for Bra016929.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06918	Canola	cytosol, nucleus, peroxisome	88.81	99.79
Bra004625.1-P	Field mustard	nucleus	80.73	89.98
AT2G41500.1	Thale cress	nucleus, plastid	88.07	86.64
CDY14776	Canola	mitochondrion	84.59	83.51
GSMUA_Achr11P...	Banana	nucleus	55.6	69.34
Solyc04g016510.2.1	Tomato	nucleus	60.73	67.83
KRH31616	Soybean	nucleus	66.79	63.86
KRH72083	Soybean	nucleus	66.06	63.16
EER94850	Sorghum	plastid	59.08	61.92
HORVU4Hr1G034750.1	Barley	cytosol, nucleus, plastid	57.06	61.71
TraesCS4B01G163800.1	Wheat	cytosol, nucleus, plastid	57.25	61.3
TraesCS4D01G160600.1	Wheat	cytosol, nucleus	56.88	60.9
TraesCS4A01G149100.1	Wheat	cytosol, nucleus, plastid	56.88	60.9
Os03t0355200-00	Rice	cytosol, nucleus, plastid	58.17	60.5
Os03t0355400-00	Rice	cytosol, nucleus, plastid	58.17	60.5
TraesCS2B01G201600.1	Wheat	cytosol, nucleus, plastid	56.7	60.23
PGSC0003DMT400033081	Potato	cytosol, nucleus, plastid	64.4	60.21
Zm00001d029188_P006	Maize	cytosol, nucleus, plastid, vacuole	58.9	58.26
TraesCS2D01G182600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	56.33	56.64
VIT_08s0007g05930.t01	Wine grape	nucleus	66.97	55.39
TraesCS2A01G175200.1	Wheat	plastid	56.15	55.33
HORVU2Hr1G032990.1	Barley	cytosol	35.23	49.36
OQU81634	Sorghum	cytosol, mitochondrion, nucleus, plastid	16.15	48.89
OQU89577	Sorghum	plastid	16.7	42.72
OQU91217	Sorghum	plastid	19.08	42.28
Bra011139.1-P	Field mustard	cytosol	12.84	21.81
Bra007771.1-P	Field mustard	cytosol	12.48	19.65
Bra037118.1-P	Field mustard	cytosol	16.88	15.03
Bra036534.1-P	Field mustard	nucleus	18.17	14.82
Bra020485.1-P	Field mustard	nucleus	17.8	14.56
Bra010317.1-P	Field mustard	cytosol	4.77	11.66
Bra014107.1-P	Field mustard	cytosol, peroxisome, plastid	12.11	10.43
Bra008598.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	14.86	9.33
Bra023582.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	14.86	9.33
Bra039543.1-P	Field mustard	nucleus	16.15	9.32

Protein Annotations

Gene3D:1.10.720.150	MapMan:16.4.1.3.2	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra016929	EnsemblPlants:Bra016929.1	EnsemblPlants:Bra016929.1-P
InterPro:G-protein_beta_WD-40_rep	GO:GO:0000003	GO:GO:0001709	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0007154
GO:GO:0007267	GO:GO:0007275	GO:GO:0008150	GO:GO:0009553	GO:GO:0009560	GO:GO:0009987
GO:GO:0016607	GO:GO:0030154	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR036285
UniProt:M4DKA0	PFAM:PF00400	PFAM:PF08799	PRINTS:PR00320	InterPro:PRP4-like	InterPro:PRP4-like_sf
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19846	InterPro:Prp4	SMART:SM00320
SMART:SM00500	SUPFAM:SSF158230	SUPFAM:SSF50978	UniParc:UPI00025436F4	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

AT2G41500 (E=4e-240) LIS, EMB2776 | EMB2776; nucleotide binding

Coordinates

chrA04:-:17549524..17551782

Molecular Weight (calculated)

60514.3 Da

IEP (calculated)

5.165

GRAVY (calculated)

-0.491

Length

545 amino acids

Sequence
(BLAST)

001: MEPNNEDNVS FIPSASPAVP ITQITAAPVP GVSPIPPPSF PPPMAPIPVA RPPTFRPPQN GGAKASDSDS ESDDEHYVIS EESKQVRERQ EKAMQELLIK
101: RRAAAIAVPT NDKSVRDRLR RLGEPITLFG EQEMERRARL AQLMARLDIG GQLDKLLQAY EDDAAPKEEV DEEELQYPFF TEGPKELREA RIEIAKFSIK
201: RAAVRIQRAK RRRDDPDEDV EAETKWALKQ AKGLALDCSN FGDDRPLTGC SFSRDGKILA TCSLSGVTKL WEMPQVTNKI AVLKDHKERA TDVVFSPVDD
301: CLATASADRT AKLWKTDGTL LQTFEGHLDR LARVAFHPSG KYLGTTSFDK TWRMWDINTG AELLLQEGHS RSVYGIAFQQ DGALAASSGL DSLARVWDLR
401: TGRSILVFQG HIKPVLSVTF SPNGYHLASG GEDNQCRIWD LRMRKSLYII PAHANLVSQV KYEPQEGYFL ATASYDMKVN IWSGRDFSLV KSLAGHESKV
501: ASLDITADSS CIATVSHDRT IKLWTSSSNE EEEEDQGGET MDVDL

Best Arabidopsis Sequence Match ( AT2G41500.2 )
(BLAST)

001: MEPNKDDNVS LAATAQISAP PVLQDASSLP GFSAIPPVVP PSFPPPMAPI PMMPHPPVAR PPTFRPPVSQ NGGVKTSDSD SESDDEHIEI SEESKQVRER
101: QEKALQDLLV KRRAAAMAVP TNDKAVRDRL RRLGEPITLF GEQEMERRAR LTQLLTRYDI NGQLDKLVKD HEEDVTPKEE VDDEVLEYPF FTEGPKELRE
201: ARIEIAKFSV KRAAVRIQRA KRRRDDPDED MDAETKWALK HAKHMALDCS NFGDDRPLTG CSFSRDGKIL ATCSLSGVTK LWEMPQVTNT IAVLKDHKER
301: ATDVVFSPVD DCLATASADR TAKLWKTDGT LLQTFEGHLD RLARVAFHPS GKYLGTTSYD KTWRLWDINT GAELLLQEGH SRSVYGIAFQ QDGALAASCG
401: LDSLARVWDL RTGRSILVFQ GHIKPVFSVN FSPNGYHLAS GGEDNQCRIW DLRMRKSLYI IPAHANLVSQ VKYEPQEGYF LATASYDMKV NIWSGRDFSL
501: VKSLAGHESK VASLDITADS SCIATVSHDR TIKLWTSSGN DDEDEEKETM DIDL

Arabidopsis Description

LISLIS [Source:UniProtKB/TrEMBL;Acc:A0A178VMW2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.