Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra029577.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G29830.1 | Bra029577.1-P | AT4G05420.1 | 18223036 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43529 | Canola | cytosol | 99.69 | 99.69 |
| AT4G29830.1 | Thale cress | cytosol | 97.82 | 97.82 |
| VIT_11s0016g01730.t01 | Wine grape | cytosol | 82.55 | 82.55 |
| KRH02663 | Soybean | cytosol, nucleus | 79.44 | 79.44 |
| GSMUA_Achr2P01810_001 | Banana | cytosol | 78.19 | 78.19 |
| KRH19247 | Soybean | cytosol, endoplasmic reticulum | 77.88 | 77.88 |
| Zm00001d048691_P001 | Maize | cytosol, extracellular, mitochondrion | 64.8 | 70.03 |
| Os11t0660300-01 | Rice | cytosol | 70.41 | 69.97 |
| PGSC0003DMT400041481 | Potato | cytosol | 69.78 | 69.35 |
| PGSC0003DMT400000871 | Potato | cytosol | 69.78 | 69.35 |
| TraesCS4D01G145700.1 | Wheat | cytosol | 69.47 | 69.25 |
| Solyc12g009030.1.1 | Tomato | cytosol, nucleus | 69.47 | 69.04 |
| TraesCS4B01G144300.1 | Wheat | cytosol | 68.85 | 68.63 |
| TraesCS4A01G165700.1 | Wheat | cytosol, nucleus | 68.85 | 68.63 |
| Solyc07g041080.2.1 | Tomato | cytosol, nucleus | 68.85 | 68.42 |
| EES08930 | Sorghum | cytosol | 68.22 | 68.01 |
| HORVU4Hr1G033170.1 | Barley | cytosol | 67.29 | 63.16 |
| Bra010317.1-P | Field mustard | cytosol | 35.2 | 50.67 |
| Bra007771.1-P | Field mustard | cytosol | 19.0 | 17.63 |
| Bra004625.1-P | Field mustard | nucleus | 22.12 | 14.52 |
| Bra036534.1-P | Field mustard | nucleus | 27.73 | 13.32 |
| Bra020485.1-P | Field mustard | nucleus | 27.1 | 13.06 |
| Bra016929.1-P | Field mustard | nucleus, plastid | 21.81 | 12.84 |
| Bra037118.1-P | Field mustard | cytosol | 22.43 | 11.76 |
| Bra014107.1-P | Field mustard | cytosol, peroxisome, plastid | 16.51 | 8.37 |
| Bra008598.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 21.18 | 7.83 |
| Bra023582.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 20.87 | 7.72 |
| Bra039543.1-P | Field mustard | nucleus | 21.18 | 7.2 |
Protein Annotations
| MapMan:15.3.6.1.6 | MapMan:16.8.1.2.6.3 | Gene3D:2.130.10.10 | InterPro:Apc4_WD40_dom | EnsemblPlantsGene:Bra011139 | EnsemblPlants:Bra011139.1 |
| EnsemblPlants:Bra011139.1-P | InterPro:G-protein_beta_WD-40_rep | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0006464 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009910 | GO:GO:0009987 | GO:GO:0010452 | GO:GO:0016043 | GO:GO:0016441 |
| GO:GO:0016593 | GO:GO:0019538 | GO:GO:0040029 | GO:GO:0051568 | GO:GO:0080008 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | UniProt:M4D3T5 | PFAM:PF00400 | PFAM:PF12894 | PRINTS:PR00320 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR44090 | SMART:SM00320 | SUPFAM:SSF50978 |
| UniParc:UPI000254715B | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
Description
AT4G29830 (E=1e-182) VIP3 | VIP3 (vernalization independence 3); nucleotide binding / protein binding
Coordinates
chrA01:-:3714176..3715323
Molecular Weight (calculated)
34203.4 Da
IEP (calculated)
6.238
GRAVY (calculated)
-0.095
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLAGLKSIE NAHEDSVWAA TWVPATEERP ALLLTGSLDE TVKLWRADEL DLVRTNTGHS LGVAAVAAHP SGIIAASSSL DSFVRVFDVD TNATIAVLEA
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPEAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNVHDA EGKTLVGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPEAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNVHDA EGKTLVGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S
001: MKLAGLKSIE NAHEDSVWAA TWVPATEDRP ALLLTGSLDE TVKLWRPDEL DLVRTNTGHS LGVAALAAHP SGIIAASSSI DSFVRVFDVD TNATIAVLEA
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S
Arabidopsis Description
VIP3WD repeat-containing protein VIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZQ5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.