Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400009595 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G29830.1 | PGSC0003DMT400009595 | AT4G05420.1 | 18223036 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g009030.1.1 | Tomato | cytosol, nucleus | 98.14 | 98.14 |
| PGSC0003DMT400041481 | Potato | cytosol | 86.69 | 86.69 |
| VIT_11s0016g01730.t01 | Wine grape | cytosol | 71.52 | 71.96 |
| AT4G29830.1 | Thale cress | cytosol | 69.97 | 70.41 |
| CDX68590 | Canola | cytosol | 69.66 | 70.09 |
| Bra011139.1-P | Field mustard | cytosol | 69.35 | 69.78 |
| CDY43529 | Canola | cytosol | 69.35 | 69.78 |
| KRH02663 | Soybean | cytosol, nucleus | 69.35 | 69.78 |
| CDY03567 | Canola | cytosol | 68.73 | 69.16 |
| CDY14200 | Canola | cytosol | 68.42 | 68.85 |
| KRH19247 | Soybean | cytosol, endoplasmic reticulum | 68.42 | 68.85 |
| GSMUA_Achr2P01810_001 | Banana | cytosol | 68.11 | 68.54 |
| Os11t0660300-01 | Rice | cytosol | 62.54 | 62.54 |
| Zm00001d048691_P001 | Maize | cytosol, extracellular, mitochondrion | 57.28 | 62.29 |
| EES08930 | Sorghum | cytosol | 60.68 | 60.87 |
| TraesCS4D01G145700.1 | Wheat | cytosol | 60.37 | 60.56 |
| TraesCS4A01G165700.1 | Wheat | cytosol, nucleus | 59.75 | 59.94 |
| TraesCS4B01G144300.1 | Wheat | cytosol | 59.75 | 59.94 |
| HORVU4Hr1G033170.1 | Barley | cytosol | 59.75 | 56.43 |
| PGSC0003DMT400009959 | Potato | cytosol | 9.6 | 22.46 |
| PGSC0003DMT400043378 | Potato | cytosol | 18.27 | 21.69 |
| PGSC0003DMT400093628 | Potato | cytosol, mitochondrion | 20.12 | 18.41 |
| PGSC0003DMT400088760 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 19.81 | 13.31 |
| PGSC0003DMT400093026 | Potato | cytosol | 20.74 | 13.11 |
| PGSC0003DMT400033081 | Potato | cytosol, nucleus, plastid | 19.5 | 10.81 |
| PGSC0003DMT400039889 | Potato | cytosol | 1.55 | 8.62 |
| PGSC0003DMT400034226 | Potato | cytosol | 6.5 | 8.37 |
| PGSC0003DMT400066026 | Potato | nucleus | 22.6 | 7.68 |
| PGSC0003DMT400034236 | Potato | cytosol, nucleus, plastid | 21.67 | 7.45 |
Protein Annotations
| EntrezGene:102594133 | MapMan:15.3.6.1.6 | MapMan:16.8.1.2.6.3 | Gene3D:2.130.10.10 | InterPro:Apc4_WD40_dom | InterPro:G-protein_beta_WD-40_rep |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| UniProt:M0ZHG7 | PFAM:PF00400 | PFAM:PF12894 | EnsemblPlantsGene:PGSC0003DMG400000330 | PGSC:PGSC0003DMG400000330 | EnsemblPlants:PGSC0003DMT400000871 |
| PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR44090 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI000294DBC6 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | RefSeq:XP_006353548.1 | SEG:seg | : | : | : |
Description
Vernalization independence 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400000330]
Coordinates
chr12:-:3502332..3505213
Molecular Weight (calculated)
34918.9 Da
IEP (calculated)
5.753
GRAVY (calculated)
-0.073
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLASLDSVT NAHDDSIWSA AWVRSTEEYP ALLLTGGLDE TVRLWDPSNF TCVQTFTGHC LGVVSVATHP TRRIAASASI DSFIRVFEVD TNNTIATLEA
101: PPSEVWQLQF SPNGSNLAAA GGGSSSVKLW DTTQWELVTT MSIPRQGAPQ PSDKSTNKKF VLSVAWSPDG RLLACGSVDG TISVFDVARA KFLHFLDGHT
201: MPVRSLVFSP SLHDSRILFS ASDDGHVHMY DAEGKTLLTS LSGHASWVLS VDISPDGAAI ATGSSDKTVR LWDLKMRAAT QTLTNHTDQV WAVAFGPTSR
301: TDVRSCMLAS VSDDKSLSFY QYS
101: PPSEVWQLQF SPNGSNLAAA GGGSSSVKLW DTTQWELVTT MSIPRQGAPQ PSDKSTNKKF VLSVAWSPDG RLLACGSVDG TISVFDVARA KFLHFLDGHT
201: MPVRSLVFSP SLHDSRILFS ASDDGHVHMY DAEGKTLLTS LSGHASWVLS VDISPDGAAI ATGSSDKTVR LWDLKMRAAT QTLTNHTDQV WAVAFGPTSR
301: TDVRSCMLAS VSDDKSLSFY QYS
001: MKLAGLKSIE NAHEDSVWAA TWVPATEDRP ALLLTGSLDE TVKLWRPDEL DLVRTNTGHS LGVAALAAHP SGIIAASSSI DSFVRVFDVD TNATIAVLEA
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S
Arabidopsis Description
VIP3WD repeat-containing protein VIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZQ5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.