Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400034226 | Potato | cytosol | 48.55 | 26.69 |
| KRG88454 | Soybean | cytosol, mitochondrion, peroxisome, plastid | 76.09 | 23.44 |
| Solyc03g097160.2.1 | Tomato | nucleus | 86.96 | 13.78 |
| KRH57076 | Soybean | plasma membrane | 78.26 | 12.77 |
| VIT_16s0039g01690.t01 | Wine grape | cytosol | 81.88 | 12.56 |
| KRH03286 | Soybean | nucleus | 78.26 | 12.29 |
| PGSC0003DMT400043378 | Potato | cytosol | 23.91 | 12.13 |
| GSMUA_Achr11P... | Banana | mitochondrion | 78.26 | 11.73 |
| CDY16982 | Canola | cytosol, mitochondrion, nucleus, plastid | 72.46 | 11.4 |
| CDX69423 | Canola | cytosol, mitochondrion, nucleus, plastid | 71.01 | 11.29 |
| Bra023582.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 71.01 | 11.29 |
| CDX85488 | Canola | cytosol, mitochondrion, nucleus, plastid | 71.01 | 11.25 |
| CDY38089 | Canola | cytosol, mitochondrion, nucleus, plastid | 70.29 | 11.18 |
| Bra008598.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 70.29 | 11.18 |
| EES12762 | Sorghum | cytosol | 71.74 | 11.16 |
| AT5G16750.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 70.29 | 11.07 |
| TraesCS7B01G423400.1 | Wheat | nucleus | 68.12 | 10.68 |
| Os04t0592700-01 | Rice | nucleus | 68.84 | 10.66 |
| Zm00001d002483_P002 | Maize | mitochondrion | 70.29 | 10.66 |
| TraesCS7D01G500800.1 | Wheat | mitochondrion | 68.12 | 10.66 |
| TraesCS2A01G447700.1 | Wheat | mitochondrion | 68.12 | 10.62 |
| Zm00001d026195_P002 | Maize | cytosol | 71.01 | 10.62 |
| TraesCS2B01G468100.1 | Wheat | nucleus | 68.12 | 10.6 |
| TraesCS2D01G446600.2 | Wheat | mitochondrion | 68.12 | 10.6 |
| HORVU2Hr1G106110.11 | Barley | mitochondrion | 67.39 | 10.56 |
| PGSC0003DMT400000871 | Potato | cytosol | 22.46 | 9.6 |
| PGSC0003DMT400041481 | Potato | cytosol | 20.29 | 8.67 |
| PGSC0003DMT400093628 | Potato | cytosol, mitochondrion | 19.57 | 7.65 |
| PGSC0003DMT400093026 | Potato | cytosol | 24.64 | 6.65 |
| PGSC0003DMT400088760 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 18.84 | 5.41 |
| PGSC0003DMT400033081 | Potato | cytosol, nucleus, plastid | 21.74 | 5.15 |
| PGSC0003DMT400034236 | Potato | cytosol, nucleus, plastid | 22.46 | 3.3 |
| PGSC0003DMT400066026 | Potato | nucleus | 22.46 | 3.26 |
| PGSC0003DMT400039889 | Potato | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:17.1.3.2.1.3.4 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:M0ZX76 | PFAM:PF00400 | EnsemblPlantsGene:PGSC0003DMG401003900 |
| PGSC:PGSC0003DMG401003900 | EnsemblPlants:PGSC0003DMT400009959 | PRINTS:PR00320 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19854 |
| PANTHER:PTHR19854:SF15 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0002952C67 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
U3 small nucleolar RNA-associated protein [Source:PGSC_GENE;Acc:PGSC0003DMG401003900]
Coordinates
chr9:+:4768122..4772166
Molecular Weight (calculated)
14763.5 Da
IEP (calculated)
6.499
GRAVY (calculated)
0.046
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAVGAVAFS KKERNFFVSG SSDRTLKVWN MDAVSGNNEE IITLKAKAVV AAHDKDINSL AVAPNDSLVC SGSQDRTACI WSLPDVVSVA TLEGHKRGIW
101: SVEFSPVDHC VLTASGDQTI KIWAISDGSC LRTFQGHI
101: SVEFSPVDHC VLTASGDQTI KIWAISDGSC LRTFQGHI
001: MAPHSLKKNY RCSRSLKQFY GGGPFIVSSD GSFIACACGD VINIVDSTDS SVKSTIEGES DTLTALALSP DDKLLFSAGH SRQIRVWDLE TLKCIRSWKG
101: HEGPVMGMAC HASGGLLATA GADRKVLVWD VDGGFCTHYF RGHKGVVSSI LFHPDSNKNI LISGSDDATV RVWDLNAKNT EKKCLAIMEK HFSAVTSIAL
201: SEDGLTLFSA GRDKVVNLWD LHDYSCKATV ATYEVLEAVT TVSSGTPFAS FVASLDQKKS KKKESDSQAT YFITVGERGV VRIWKSEGSI CLYEQKSSDI
301: TVSSDDEESK RGFTAAAMLP SDHGLLCVTA DQQFFFYSVV ENVEETELVL SKRLVGYNEE IADMKFLGDE EQFLAVATNL EEVRVYDVAT MSCSYVLAGH
401: KEVVLSLDTC VSSSGNVLIV TGSKDKTVRL WNATSKSCIG VGTGHNGDIL AVAFAKKSFS FFVSGSGDRT LKVWSLDGIS EDSEEPINLK TRSVVAAHDK
501: DINSVAVARN DSLVCTGSED RTASIWRLPD LVHVVTLKGH KRRIFSVEFS TVDQCVMTAS GDKTVKIWAI SDGSCLKTFE GHTSSVLRAS FITDGTQFVS
601: CGADGLLKLW NVNTSECIAT YDQHEDKVWA LAVGKKTEMI ATGGGDAVIN LWHDSTASDK EDDFRKEEEA ILRGQELENA VLDAEYTKAI RLAFELCRPH
701: KVFELFSGLC RKRDSDEQIV KALQGLEKEE FRLLFEYVRE WNTKPKLCHI AQFVLYKTFN ILPPTEIVQV KGIGELLEGL IPYSQRHFSR IDRFVRSSFL
801: LDYTLGEMSV IDPETVETEY PKDEKKKEKD VIAAMEQDTD ELKQETPSRK RKSQKSKGKS NKKRLIAEAQ GSVIAV
101: HEGPVMGMAC HASGGLLATA GADRKVLVWD VDGGFCTHYF RGHKGVVSSI LFHPDSNKNI LISGSDDATV RVWDLNAKNT EKKCLAIMEK HFSAVTSIAL
201: SEDGLTLFSA GRDKVVNLWD LHDYSCKATV ATYEVLEAVT TVSSGTPFAS FVASLDQKKS KKKESDSQAT YFITVGERGV VRIWKSEGSI CLYEQKSSDI
301: TVSSDDEESK RGFTAAAMLP SDHGLLCVTA DQQFFFYSVV ENVEETELVL SKRLVGYNEE IADMKFLGDE EQFLAVATNL EEVRVYDVAT MSCSYVLAGH
401: KEVVLSLDTC VSSSGNVLIV TGSKDKTVRL WNATSKSCIG VGTGHNGDIL AVAFAKKSFS FFVSGSGDRT LKVWSLDGIS EDSEEPINLK TRSVVAAHDK
501: DINSVAVARN DSLVCTGSED RTASIWRLPD LVHVVTLKGH KRRIFSVEFS TVDQCVMTAS GDKTVKIWAI SDGSCLKTFE GHTSSVLRAS FITDGTQFVS
601: CGADGLLKLW NVNTSECIAT YDQHEDKVWA LAVGKKTEMI ATGGGDAVIN LWHDSTASDK EDDFRKEEEA ILRGQELENA VLDAEYTKAI RLAFELCRPH
701: KVFELFSGLC RKRDSDEQIV KALQGLEKEE FRLLFEYVRE WNTKPKLCHI AQFVLYKTFN ILPPTEIVQV KGIGELLEGL IPYSQRHFSR IDRFVRSSFL
801: LDYTLGEMSV IDPETVETEY PKDEKKKEKD VIAAMEQDTD ELKQETPSRK RKSQKSKGKS NKKRLIAEAQ GSVIAV
Arabidopsis Description
TOZTransducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LFE2]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.