Factsheet for TraesCS2B01G468100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G446600.2	Wheat	mitochondrion	98.2	98.2
TraesCS2A01G447700.1	Wheat	mitochondrion	97.41	97.63
HORVU2Hr1G106110.11	Barley	mitochondrion	95.72	96.37
TraesCS7B01G423400.1	Wheat	nucleus	95.6	96.36
Os04t0592700-01	Rice	nucleus	85.34	84.96
EES12762	Sorghum	cytosol	84.22	84.22
Zm00001d002483_P002	Maize	mitochondrion	82.53	80.44
Zm00001d026195_P002	Maize	cytosol	82.86	79.63
PGSC0003DMT400009959	Potato	cytosol	10.6	68.12
KRG88454	Soybean	cytosol, mitochondrion, peroxisome, plastid	33.37	66.07
GSMUA_Achr11P...	Banana	mitochondrion	67.87	65.36
VIT_16s0039g01690.t01	Wine grape	cytosol	65.16	64.22
KRH03286	Soybean	nucleus	61.67	62.23
AT5G16750.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	61.22	61.99
CDY38089	Canola	cytosol, mitochondrion, nucleus, plastid	60.2	61.52
CDX85488	Canola	cytosol, mitochondrion, nucleus, plastid	60.32	61.42
Bra023582.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	60.09	61.41
Solyc03g097160.2.1	Tomato	nucleus	59.98	61.08
Bra008598.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	59.75	61.06
CDX69423	Canola	cytosol, mitochondrion, nucleus, plastid	59.75	61.06
CDY16982	Canola	cytosol, mitochondrion, nucleus, plastid	60.09	60.78
KRH57076	Soybean	plasma membrane	57.61	60.4
PGSC0003DMT400034226	Potato	cytosol	17.02	60.16
TraesCS7B01G416400.1	Wheat	nucleus	11.84	21.47
TraesCS4B01G144300.1	Wheat	cytosol	7.44	20.5
TraesCS7B01G346100.1	Wheat	cytosol	7.55	19.14
TraesCS7B01G346200.1	Wheat	cytosol, nucleus, plastid	7.55	19.14
TraesCS5B01G318400.1	Wheat	nucleus	14.09	19.05
TraesCS2B01G201600.1	Wheat	cytosol, nucleus, plastid	9.7	16.76
TraesCS4B01G163800.1	Wheat	cytosol, nucleus, plastid	9.47	16.5
TraesCS2B01G255700.1	Wheat	nucleus	9.92	15.77
TraesCS4B01G317800.1	Wheat	nucleus	16.57	15.64
CDY12834	Canola	endoplasmic reticulum, extracellular	1.13	5.38

Protein Annotations

MapMan:17.1.3.2.1.3.4	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0032040	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF08625
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19854	PANTHER:PTHR19854:SF15
InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF50998	InterPro:SSU_processome_Utp13	EnsemblPlantsGene:TraesCS2B01G468100
EnsemblPlants:TraesCS2B01G468100.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
TIGR:cd00200	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:664126951..664133093

Molecular Weight (calculated)

97034.6 Da

IEP (calculated)

6.643

GRAVY (calculated)

-0.192

Length

887 amino acids

Sequence
(BLAST)

001: MALSQGPKKN YRCDRSLQQF YTGGPFAVGR GPRGEGEGES DAETFLACAC GSELRVVSAA DASAIGEPID GDSEAVTGIA LSPDSRLLFA AGHSKLIRVW
101: DLASRTCIRS WKGHDGPVMA MACHASGGLL ATAGADKKVC VWDVDGGFCT HFFRGHTGVV TTIMFHKDPK RLLLFSGSDD GTVRVWNLES KKCIAVLNAH
201: FSTVTSLALS EDGLTLLSAG RDKVVNVWDL RKYASKKTIP AYEMIEGVSF IGPGSGILAC LGAEAAKLKE KTDGYFLTVG ERGIVRIWCL ESAVCMFEQQ
301: SSDVTINSEN EESRRGFTAT IMLPDDQGIL CVTADQQFLF YSCTRTDEGT FQLNLYKRLI GYNDEILDLK FVGEEEQYLA VATNLEQVRV YDIASMSCSY
401: VLAGHTEIVV CLDTCVSASG KTLVVTGSKD NTVRLWDMEK RSCIGTGKGH LGAIGCVAFS KKSKNFFVSG SSDRTIKVWT WDDTLIDAGG EVPLKAKAGV
501: AAHDKDINSL SVSPNDGLVC SGSEDRTASI WKLPNLVSSV VLKGHKRGIW SVEFSPVEQC VITSSGDKTV KIWHVADGSC LKTFEGHTSS VLRASFLSRG
601: TQFVSCGSDG LVKLWTIKTN ECIATYDKHD GKVWALAVGK KTEMLATGGT DSDLNLWHDC TMEDKQEDFL KKEEEVLRGQ ELENAVSDSD YTRAIQLAFE
701: LRRPRRLLEL FSQLCRKADP EDPIEKALLG LPKEGLRVLL EYIREWNTKP KFCHVAQFVL FRVLRSLPPT DILEIKGISE LLEGLIPYSQ RHFSRVDRLV
801: RSTFLLDYTL TRMSVVDPDV DAGTTKDVTN DTSMDNVEIV TAEPALKTPE KSSKKRKSSK TSQSSKKSSK KVKASSNGDS KAVSVEA

Best Arabidopsis Sequence Match ( AT5G16750.1 )
(BLAST)

001: MAPHSLKKNY RCSRSLKQFY GGGPFIVSSD GSFIACACGD VINIVDSTDS SVKSTIEGES DTLTALALSP DDKLLFSAGH SRQIRVWDLE TLKCIRSWKG
101: HEGPVMGMAC HASGGLLATA GADRKVLVWD VDGGFCTHYF RGHKGVVSSI LFHPDSNKNI LISGSDDATV RVWDLNAKNT EKKCLAIMEK HFSAVTSIAL
201: SEDGLTLFSA GRDKVVNLWD LHDYSCKATV ATYEVLEAVT TVSSGTPFAS FVASLDQKKS KKKESDSQAT YFITVGERGV VRIWKSEGSI CLYEQKSSDI
301: TVSSDDEESK RGFTAAAMLP SDHGLLCVTA DQQFFFYSVV ENVEETELVL SKRLVGYNEE IADMKFLGDE EQFLAVATNL EEVRVYDVAT MSCSYVLAGH
401: KEVVLSLDTC VSSSGNVLIV TGSKDKTVRL WNATSKSCIG VGTGHNGDIL AVAFAKKSFS FFVSGSGDRT LKVWSLDGIS EDSEEPINLK TRSVVAAHDK
501: DINSVAVARN DSLVCTGSED RTASIWRLPD LVHVVTLKGH KRRIFSVEFS TVDQCVMTAS GDKTVKIWAI SDGSCLKTFE GHTSSVLRAS FITDGTQFVS
601: CGADGLLKLW NVNTSECIAT YDQHEDKVWA LAVGKKTEMI ATGGGDAVIN LWHDSTASDK EDDFRKEEEA ILRGQELENA VLDAEYTKAI RLAFELCRPH
701: KVFELFSGLC RKRDSDEQIV KALQGLEKEE FRLLFEYVRE WNTKPKLCHI AQFVLYKTFN ILPPTEIVQV KGIGELLEGL IPYSQRHFSR IDRFVRSSFL
801: LDYTLGEMSV IDPETVETEY PKDEKKKEKD VIAAMEQDTD ELKQETPSRK RKSQKSKGKS NKKRLIAEAQ GSVIAV

Arabidopsis Description

TOZTransducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LFE2]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.