CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023582.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	99.66	100.0
CDY38089	Canola	cytosol, mitochondrion, nucleus, plastid	97.01	97.35
CDX69423	Canola	cytosol, mitochondrion, nucleus, plastid	94.72	95.05
CDY16982	Canola	cytosol, mitochondrion, nucleus, plastid	95.41	94.75
AT5G16750.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	91.39	90.87
PGSC0003DMT400009959	Potato	cytosol	11.25	71.01
Solyc03g097160.2.1	Tomato	nucleus	64.41	64.41
TraesCS7D01G500800.1	Wheat	mitochondrion	61.42	60.66
TraesCS2A01G447700.1	Wheat	mitochondrion	61.42	60.45
TraesCS2D01G446600.2	Wheat	mitochondrion	61.54	60.43
TraesCS2B01G468100.1	Wheat	nucleus	61.42	60.32
TraesCS7B01G423400.1	Wheat	nucleus	60.85	60.23
HORVU2Hr1G106110.11	Barley	mitochondrion	60.85	60.16
Os04t0592700-01	Rice	nucleus	60.96	59.6
GSMUA_Achr11P...	Banana	mitochondrion	62.23	58.85
EES12762	Sorghum	cytosol	59.47	58.4
Zm00001d002483_P002	Maize	mitochondrion	59.47	56.92
Zm00001d026195_P002	Maize	cytosol	59.47	56.12
PGSC0003DMT400034226	Potato	cytosol	16.07	55.78
CDY14200	Canola	cytosol	7.81	21.18
CDY03567	Canola	cytosol	7.81	21.18
CDX68590	Canola	cytosol	7.69	20.87
CDY43529	Canola	cytosol	7.69	20.87
CDX76728	Canola	cytosol	7.35	18.5
CDY11502	Canola	cytosol	7.35	18.5
CDX87098	Canola	nucleus	13.32	17.37
CDY19814	Canola	nucleus	13.32	17.37
CDY05378	Canola	nucleus	12.86	16.87
CDY05473	Canola	nucleus	12.86	16.82
CDY57442	Canola	cytosol	3.9	15.45
CDX79933	Canola	nucleus	7.58	15.38
CDY54973	Canola	nucleus	16.3	15.25
CDY22910	Canola	nucleus	16.19	15.14
CDY23845	Canola	nucleus	7.46	15.12
CDY18648	Canola	cytosol	9.87	15.04
CDX81324	Canola	cytosol	10.22	14.5
CDY06918	Canola	cytosol, nucleus, peroxisome	7.69	13.81
CDY41854	Canola	cytosol	8.04	12.87
CDY14776	Canola	mitochondrion	7.69	12.14
CDY57444	Canola	cytosol, mitochondrion	4.02	12.07
CDY12836	Canola	extracellular, vacuole	1.15	11.76
CDX77335	Canola	cytosol	5.63	11.61
CDY12834	Canola	endoplasmic reticulum, extracellular	1.84	8.6
CDY72066	Canola	cytosol	0.57	4.42
CDX92625	Canola	cytosol	0.57	4.42
CDY43370	Canola	cytosol	0.57	4.42
CDY40782	Canola	cytosol	0.57	4.42
CDY27109	Canola	cytosol	0.57	4.42

Protein Annotations

MapMan:17.1.3.2.1.3.4	Gene3D:2.130.10.10	GO:A0A078DDX4	EnsemblPlants:CDX85488	ProteinID:CDX85488	ProteinID:CDX85488.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006139
GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0032040	EnsemblPlantsGene:GSBRNA2T00143189001
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF08625	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19854	PANTHER:PTHR19854:SF15	InterPro:Quinoprotein_ADH-like_supfam
SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF50998	InterPro:SSU_processome_Utp13	UniParc:UPI0004EF2BD1	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

BnaA02g03250D

Coordinates

chrLK031842:+:328108..332975

Molecular Weight (calculated)

96368.2 Da

IEP (calculated)

5.947

GRAVY (calculated)

-0.266

Length

871 amino acids

Sequence
(BLAST)

001: MAPQSLKKNY RCSRSLKQFY SGGPFVVSSD GSFIVCACGD AINIVDASDS SVKSTIEGES DTLTALALSP DDKLLFSGGH SRQIRVWDLE TLKCIRTWKG
101: HEGPVMGMAC HASGGLLATA GADRKVLVWD VDGGFCTHYF KGHKGVVSSV LFHPDANKNI LISGSDDATV RVWDLMAKNT EKKCLAILDK HFSAVSSIAL
201: SEDGLTLLTA GRDKVVNVWD LHDYSCKTTV ATYEVLEAVT IVSSGSPFAS FIASLDQKSK KKKTSSQETH FITLGERGVV RIWKSEGSVC LYEQKSSDIT
301: VSSDDEESKR GFTAAAMLPS DRGLLCVTAD QQFFIYSVVE NVEEPELVLR KRLVGYNEEI SDMKFLGDEE QFLAVATNLE EVRVYDVATM SCSYVLAGHK
401: EVVLSLDTCV SSSGNVLVVT GSKDKTVRLW NATSQSCIGV GTGHNGDILA VAFAKKSFSF FVSGSGDRTL KVWSLDGISE DSEEPINLKT RSVVAAHDKD
501: INSVAVARND SLVCTGSEDR TASIWRLPDL VHVVTLKGHK RRIFSVEFSP VDQCVMTASG DKTVKIWAIS DGSCLKTFEG HTSSVLRASF ITDGTQFVSC
601: GADGLLKLWN VNTSECTATY DQHEDKVWAL AVGKKTEMVA TGGGDAVINI WHDSTASDKE DEFRKEEETI LRGQELENAV LDAEYTKAIR LAFELRRPHK
701: VYELFAGLCK KRESDDQIVK ALQGLEKEEF RLLFEYLREW NTKPNRCHIA QFVLYQTFNI LPPTEIVQVK GIGELLEGLI PYSQRHFNRM DRFVRSSFLL
801: DYTLGEMSVI DPKTDTEYPK DKKIEEETRE MEQEPEADQK TPSRKRKSQK SKDRSSKKRL VAEAQGNVIA V

Best Arabidopsis Sequence Match ( AT5G16750.1 )
(BLAST)

001: MAPHSLKKNY RCSRSLKQFY GGGPFIVSSD GSFIACACGD VINIVDSTDS SVKSTIEGES DTLTALALSP DDKLLFSAGH SRQIRVWDLE TLKCIRSWKG
101: HEGPVMGMAC HASGGLLATA GADRKVLVWD VDGGFCTHYF RGHKGVVSSI LFHPDSNKNI LISGSDDATV RVWDLNAKNT EKKCLAIMEK HFSAVTSIAL
201: SEDGLTLFSA GRDKVVNLWD LHDYSCKATV ATYEVLEAVT TVSSGTPFAS FVASLDQKKS KKKESDSQAT YFITVGERGV VRIWKSEGSI CLYEQKSSDI
301: TVSSDDEESK RGFTAAAMLP SDHGLLCVTA DQQFFFYSVV ENVEETELVL SKRLVGYNEE IADMKFLGDE EQFLAVATNL EEVRVYDVAT MSCSYVLAGH
401: KEVVLSLDTC VSSSGNVLIV TGSKDKTVRL WNATSKSCIG VGTGHNGDIL AVAFAKKSFS FFVSGSGDRT LKVWSLDGIS EDSEEPINLK TRSVVAAHDK
501: DINSVAVARN DSLVCTGSED RTASIWRLPD LVHVVTLKGH KRRIFSVEFS TVDQCVMTAS GDKTVKIWAI SDGSCLKTFE GHTSSVLRAS FITDGTQFVS
601: CGADGLLKLW NVNTSECIAT YDQHEDKVWA LAVGKKTEMI ATGGGDAVIN LWHDSTASDK EDDFRKEEEA ILRGQELENA VLDAEYTKAI RLAFELCRPH
701: KVFELFSGLC RKRDSDEQIV KALQGLEKEE FRLLFEYVRE WNTKPKLCHI AQFVLYKTFN ILPPTEIVQV KGIGELLEGL IPYSQRHFSR IDRFVRSSFL
801: LDYTLGEMSV IDPETVETEY PKDEKKKEKD VIAAMEQDTD ELKQETPSRK RKSQKSKGKS NKKRLIAEAQ GSVIAV

Arabidopsis Description

TOZTransducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LFE2]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.