CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32243
CDY34469

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26060.1	CDY32243	AT4G16440.1	23104832
AT2G26060.1	CDY34469	AT4G16440.1	23104832

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27109	Canola	cytosol	26.78	100.0
CDY40782	Canola	cytosol	26.78	100.0
CDY43370	Canola	cytosol	26.78	100.0
CDY72066	Canola	cytosol	26.78	100.0
CDX92625	Canola	cytosol	26.78	100.0
AT2G26060.1	Thale cress	cytosol	41.47	49.72
CDX76728	Canola	cytosol	39.57	48.27
CDY11502	Canola	cytosol	39.57	48.27
VIT_08s0007g03360.t01	Wine grape	cytosol	33.65	41.28
KRH67917	Soybean	cytosol	32.7	40.23
GSMUA_Achr5P26190_001	Banana	cytosol	33.18	40.23
Solyc09g074400.2.1	Tomato	cytosol	31.99	38.46
CDY41854	Canola	cytosol	49.53	38.42
TraesCS7D01G435400.1	Wheat	cytosol	30.33	36.57
HORVU7Hr1G101230.1	Barley	cytosol	29.15	36.39
TraesCS7B01G346200.1	Wheat	cytosol, nucleus, plastid	30.09	36.29
TraesCS7A01G446500.1	Wheat	cytosol	30.09	36.29
Os07t0252000-01	Rice	cytosol	30.33	36.26
EER98280	Sorghum	cytosol, nucleus, plastid	29.38	35.94
Zm00001d019299_P001	Maize	cytosol	29.62	35.82
TraesCS7A01G446400.2	Wheat	cytosol	28.44	34.58
TraesCS7D01G435500.1	Wheat	cytosol	28.2	34.1
TraesCS7B01G346100.1	Wheat	cytosol	28.2	34.0
PGSC0003DMT400043378	Potato	cytosol	20.62	31.99
Bra014107.1-P	Field mustard	cytosol, peroxisome, plastid	43.6	29.07
Solyc09g009410.2.1	Tomato	cytosol, nucleus	22.51	27.3
KRH33352	Soybean	plastid	15.4	25.59
CDY18648	Canola	cytosol	15.4	11.36
CDX68590	Canola	cytosol	8.53	11.21
CDY03567	Canola	cytosol	8.53	11.21
CDY43529	Canola	cytosol	8.53	11.21
CDY14200	Canola	cytosol	8.53	11.21
CDX81324	Canola	cytosol	15.64	10.75
CDY12836	Canola	extracellular, vacuole	2.13	10.59
CDY57444	Canola	cytosol, mitochondrion	6.87	10.0
CDY23845	Canola	nucleus	9.48	9.3
CDX79933	Canola	nucleus	9.24	9.09
CDX87098	Canola	nucleus	13.98	8.83
CDY19814	Canola	nucleus	13.74	8.68
CDY05473	Canola	nucleus	13.27	8.41
CDY05378	Canola	nucleus	13.03	8.28
CDY06918	Canola	cytosol, nucleus, peroxisome	9.48	8.25
CDY14776	Canola	mitochondrion	9.48	7.25
CDY12834	Canola	endoplasmic reticulum, extracellular	2.84	6.45
CDY57442	Canola	cytosol	3.32	6.36
CDX69423	Canola	cytosol, mitochondrion, nucleus, plastid	12.32	5.99
CDY16982	Canola	cytosol, mitochondrion, nucleus, plastid	12.09	5.82
CDY54973	Canola	nucleus	12.56	5.69
CDY22910	Canola	nucleus	12.56	5.69
CDX85488	Canola	cytosol, mitochondrion, nucleus, plastid	11.61	5.63
CDY38089	Canola	cytosol, mitochondrion, nucleus, plastid	11.37	5.53

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlants:CDX77335	ProteinID:CDX77335	ProteinID:CDX77335.1	InterPro:CIAO1/Cia1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016226	GO:GO:0097361	EnsemblPlantsGene:GSBRNA2T00128114001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19920	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EDEB9A	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaC08g03800D

Coordinates

chrLK031810:-:1658253..1667799

Molecular Weight (calculated)

47360.9 Da

IEP (calculated)

6.589

GRAVY (calculated)

0.053

Length

422 amino acids

Sequence
(BLAST)

001: MFVKEIYVVR GGHEVWASER MYSSCLFSES NSNRSITKPE VSVASCKIKN TELIKRAFFQ NVFEYEPAIN FLFFDKIQNY INFICYIAWP TKAFRIFLKK
101: YLHTFWLNTI ARKKQPKPCL LFLVGLLSLS CSLRRYPALS VILSGVLSIA DRLLLAIESR SSSLISHPDL LSQLVLLLLL LLLVTQSVIS NGFLCLLSDF
201: ELSCRFFGEM DLMEKKLELV ELHKLEGHTD RVWNVSWNPV GTLPILASCS GDNTVRIWEQ SSLSLTPGLA RTVRSCAWSP SGKLLATASF DGTTAIWQNL
301: GDEFECISTL EEHENEVKSV SWNAAGSYLA TFISPTHLCT YSAHWSRDNI IASGAGDDAI RLYVDSNNDS ADGPSCNLLL KKEKAHDMDV NSVQWSPGEE
401: NRLLASASDD GMVKIWQLAT KP

Best Arabidopsis Sequence Match ( AT2G26060.2 )
(BLAST)

001: MDLMEKNLEL VEIQKLEGHT DRVWSVAWNP VSSHADGVSP ILASCSGDNT VRIWEQSSLS RSWTCKTVLE ETHTRTVRSC AWSPSGQLLA TASFDGTTGI
101: WKNYGSEFEC ISTLEGHENE VKSVSWNASG SCLATCSRDK SVWIWEVLEG NEYDCAAVLT GHTQDVKMVQ WHPTMDVLFS CSYDNTIKVW WSEDDDGEYQ
201: CVQTLGESNN GHSSTVWSIS FNAAGDKMVT CSDDLTLKIW GTDIAKMQSG EEYAPWIHLC TLSGYHDRTI YSAHWSRDDI IASGAGDNAI RLFVDSKHDS
301: VDGPSYNLLL KKNKAHENDV NSVQWSPGVR EPVACVG

Arabidopsis Description

CIA1Protein CIA1 [Source:UniProtKB/Swiss-Prot;Acc:O80990]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.