Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G26060.1 | CDY32243 | AT4G16440.1 | 23104832 |
| AT2G26060.1 | CDY34469 | AT4G16440.1 | 23104832 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007771.1-P | Field mustard | cytosol | 97.11 | 97.11 |
| CDY11502 | Canola | cytosol | 97.11 | 97.11 |
| AT2G26060.1 | Thale cress | cytosol | 86.42 | 84.94 |
| VIT_08s0007g03360.t01 | Wine grape | cytosol | 73.41 | 73.84 |
| Solyc09g074400.2.1 | Tomato | cytosol | 70.23 | 69.23 |
| PGSC0003DMT400043378 | Potato | cytosol | 54.34 | 69.12 |
| KRH67917 | Soybean | cytosol | 68.5 | 69.1 |
| GSMUA_Achr5P26190_001 | Banana | cytosol | 67.92 | 67.53 |
| EER98280 | Sorghum | cytosol, nucleus, plastid | 65.61 | 65.8 |
| HORVU7Hr1G101230.1 | Barley | cytosol | 63.87 | 65.38 |
| Zm00001d019299_P001 | Maize | cytosol | 65.9 | 65.33 |
| Os07t0252000-01 | Rice | cytosol | 65.32 | 64.02 |
| TraesCS7D01G435400.1 | Wheat | cytosol | 64.16 | 63.43 |
| TraesCS7B01G346200.1 | Wheat | cytosol, nucleus, plastid | 63.87 | 63.14 |
| TraesCS7A01G446500.1 | Wheat | cytosol | 63.29 | 62.57 |
| TraesCS7B01G346100.1 | Wheat | cytosol | 62.14 | 61.43 |
| TraesCS7D01G435500.1 | Wheat | cytosol | 61.56 | 61.03 |
| TraesCS7A01G446400.2 | Wheat | cytosol | 60.69 | 60.52 |
| KRH33352 | Soybean | plastid | 36.71 | 50.0 |
| CDY41854 | Canola | cytosol | 75.43 | 47.98 |
| Solyc09g009410.2.1 | Tomato | cytosol, nucleus | 47.69 | 47.41 |
| CDX77335 | Canola | cytosol | 48.27 | 39.57 |
| CDY57442 | Canola | cytosol | 12.72 | 20.0 |
| CDY43529 | Canola | cytosol | 17.34 | 18.69 |
| CDX68590 | Canola | cytosol | 17.05 | 18.38 |
| CDY03567 | Canola | cytosol | 17.05 | 18.38 |
| CDY14200 | Canola | cytosol | 17.05 | 18.38 |
| CDY18648 | Canola | cytosol | 27.17 | 16.43 |
| CDX81324 | Canola | cytosol | 27.46 | 15.47 |
| CDX79933 | Canola | nucleus | 14.16 | 11.42 |
| CDY23845 | Canola | nucleus | 13.87 | 11.16 |
| CDX87098 | Canola | nucleus | 20.52 | 10.63 |
| CDY19814 | Canola | nucleus | 20.23 | 10.48 |
| CDY06918 | Canola | cytosol, nucleus, peroxisome | 14.45 | 10.31 |
| CDY05473 | Canola | nucleus | 19.65 | 10.21 |
| CDY05378 | Canola | nucleus | 19.08 | 9.94 |
| CDY14776 | Canola | mitochondrion | 14.45 | 9.06 |
| CDY57444 | Canola | cytosol, mitochondrion | 6.94 | 8.28 |
| CDX69423 | Canola | cytosol, mitochondrion, nucleus, plastid | 18.79 | 7.49 |
| CDY16982 | Canola | cytosol, mitochondrion, nucleus, plastid | 18.79 | 7.41 |
| CDX85488 | Canola | cytosol, mitochondrion, nucleus, plastid | 18.5 | 7.35 |
| CDY38089 | Canola | cytosol, mitochondrion, nucleus, plastid | 18.21 | 7.26 |
| CDY54973 | Canola | nucleus | 19.36 | 7.2 |
| CDY22910 | Canola | nucleus | 19.08 | 7.09 |
| CDY12834 | Canola | endoplasmic reticulum, extracellular | 1.73 | 3.23 |
| CDY12836 | Canola | extracellular, vacuole | 0.29 | 1.18 |
| CDX92625 | Canola | cytosol | 0.0 | 0.0 |
| CDY72066 | Canola | cytosol | 0.0 | 0.0 |
| CDY43370 | Canola | cytosol | 0.0 | 0.0 |
| CDY27109 | Canola | cytosol | 0.0 | 0.0 |
| CDY40782 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:7.11.3.2.1 | GO:A0A078CNR6 | EnsemblPlants:CDX76728 | ProteinID:CDX76728 | ProteinID:CDX76728.1 |
| InterPro:CIAO1/Cia1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016226 | GO:GO:0097361 | EnsemblPlantsGene:GSBRNA2T00127215001 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | HAMAP:MF_03037 | PFAM:PF00400 | PRINTS:PR00320 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19920 | SMART:SM00320 | SUPFAM:SSF50978 |
| UniParc:UPI0004EDEE57 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g33140D
Coordinates
chrLK031808:-:729726..731920
Molecular Weight (calculated)
38670.8 Da
IEP (calculated)
4.387
GRAVY (calculated)
-0.374
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLMEKNMEL IEVQKLEGHT DRVWNAAWNP VSPILASCSG DNTVRIWEQS SLSRSWSCKT VLEETHTRTV RSCSWSPSGK LLATASFDGT TAIWEDLGDE
101: FECISTLEGH ENEVKSVSWN ASGSYLATCS RDKSVWIWEV LGGNEYDCAS VLNGHTQDVK MVLWHPTMDV LFSCSYDNTI KVWWSEDDDG DYQCVQTLDE
201: STNGHSSTVW AISFNAAGDK MVTCSDDLTL KIWRADISMM HSGEGYAPWT HVCTLSGYHD RTIFSTHWSS DDIIASGAGD DAIGLFVESK QHDSVNGPSF
301: NLLLKKEKAH EMDINSVQWS PSKENRLLAS ASDDGMVKIW QLETIP
101: FECISTLEGH ENEVKSVSWN ASGSYLATCS RDKSVWIWEV LGGNEYDCAS VLNGHTQDVK MVLWHPTMDV LFSCSYDNTI KVWWSEDDDG DYQCVQTLDE
201: STNGHSSTVW AISFNAAGDK MVTCSDDLTL KIWRADISMM HSGEGYAPWT HVCTLSGYHD RTIFSTHWSS DDIIASGAGD DAIGLFVESK QHDSVNGPSF
301: NLLLKKEKAH EMDINSVQWS PSKENRLLAS ASDDGMVKIW QLETIP
001: MDLMEKNLEL VEIQKLEGHT DRVWSVAWNP VSSHADGVSP ILASCSGDNT VRIWEQSSLS RSWTCKTVLE ETHTRTVRSC AWSPSGQLLA TASFDGTTGI
101: WKNYGSEFEC ISTLEGHENE VKSVSWNASG SCLATCSRDK SVWIWEVLEG NEYDCAAVLT GHTQDVKMVQ WHPTMDVLFS CSYDNTIKVW WSEDDDGEYQ
201: CVQTLGESNN GHSSTVWSIS FNAAGDKMVT CSDDLTLKIW GTDIAKMQSG EEYAPWIHLC TLSGYHDRTI YSAHWSRDDI IASGAGDNAI RLFVDSKHDS
301: VDGPSYNLLL KKNKAHENDV NSVQWSPGEG NRLLASASDD GMVKIWQLAT KP
101: WKNYGSEFEC ISTLEGHENE VKSVSWNASG SCLATCSRDK SVWIWEVLEG NEYDCAAVLT GHTQDVKMVQ WHPTMDVLFS CSYDNTIKVW WSEDDDGEYQ
201: CVQTLGESNN GHSSTVWSIS FNAAGDKMVT CSDDLTLKIW GTDIAKMQSG EEYAPWIHLC TLSGYHDRTI YSAHWSRDDI IASGAGDNAI RLFVDSKHDS
301: VDGPSYNLLL KKNKAHENDV NSVQWSPGEG NRLLASASDD GMVKIWQLAT KP
Arabidopsis Description
CIA1Protein CIA1 [Source:UniProtKB/Swiss-Prot;Acc:O80990]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.