Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU5Hr1G094840.5 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G26060.1 | HORVU5Hr1G094840.5 | AT4G16440.1 | 23104832 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G435400.1 | Wheat | cytosol | 96.15 | 92.86 |
| TraesCS7B01G346200.1 | Wheat | cytosol, nucleus, plastid | 95.86 | 92.57 |
| TraesCS7A01G446500.1 | Wheat | cytosol | 95.86 | 92.57 |
| TraesCS7A01G446400.2 | Wheat | cytosol | 87.57 | 85.3 |
| TraesCS7D01G435500.1 | Wheat | cytosol | 86.98 | 84.24 |
| TraesCS7B01G346100.1 | Wheat | cytosol | 86.69 | 83.71 |
| Os07t0252000-01 | Rice | cytosol | 87.28 | 83.57 |
| Zm00001d019299_P001 | Maize | cytosol | 85.21 | 82.52 |
| EER98280 | Sorghum | cytosol, nucleus, plastid | 84.02 | 82.32 |
| GSMUA_Achr5P26190_001 | Banana | cytosol | 69.53 | 67.53 |
| VIT_08s0007g03360.t01 | Wine grape | cytosol | 68.64 | 67.44 |
| CDY11502 | Canola | cytosol | 65.68 | 64.16 |
| Bra007771.1-P | Field mustard | cytosol | 65.38 | 63.87 |
| CDX76728 | Canola | cytosol | 65.38 | 63.87 |
| KRH67917 | Soybean | cytosol | 64.79 | 63.85 |
| PGSC0003DMT400043378 | Potato | cytosol | 50.89 | 63.24 |
| Solyc09g074400.2.1 | Tomato | cytosol | 64.2 | 61.82 |
| AT2G26060.1 | Thale cress | cytosol | 63.91 | 61.36 |
| AT4G32990.1 | Thale cress | cytosol | 52.96 | 54.57 |
| KRH33352 | Soybean | plastid | 34.91 | 46.46 |
| Solyc09g009410.2.1 | Tomato | cytosol, nucleus | 42.9 | 41.67 |
| CDY41854 | Canola | cytosol | 57.99 | 36.03 |
| CDX77335 | Canola | cytosol | 36.39 | 29.15 |
| Bra014107.1-P | Field mustard | cytosol, peroxisome, plastid | 50.3 | 26.86 |
| HORVU2Hr1G032990.1 | Barley | cytosol | 21.01 | 18.25 |
| HORVU4Hr1G033170.1 | Barley | cytosol | 16.86 | 16.67 |
| HORVU0Hr1G022460.1 | Barley | nucleus | 21.89 | 15.13 |
| HORVU4Hr1G034750.1 | Barley | cytosol, nucleus, plastid | 21.6 | 14.48 |
| HORVU2Hr1G053480.9 | Barley | mitochondrion | 22.78 | 13.75 |
| HORVU7Hr1G113760.2 | Barley | nucleus | 22.19 | 11.43 |
| HORVU2Hr1G106110.11 | Barley | mitochondrion | 18.64 | 7.15 |
| HORVU4Hr1G083410.1 | Barley | endoplasmic reticulum | 21.3 | 7.11 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:7.11.3.2.1 | UniProt:A0A287XLL0 | InterPro:CIAO1/Cia1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016226 | GO:GO:0097361 | EnsemblPlantsGene:HORVU7Hr1G101230 | EnsemblPlants:HORVU7Hr1G101230.1 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | HAMAP:MF_03037 | PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR19920 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000B47BB1F | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : |
Description
Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog [Source:UniProtKB/TrEMBL;Acc:A0A287XLL0]
Coordinates
chrchr7H:+:607940680..607945895
Molecular Weight (calculated)
36922.5 Da
IEP (calculated)
4.577
GRAVY (calculated)
-0.410
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGGAAELR ETHRLTGHAD RAWSLAWNPN PGAGAGPVLA SCGGDKTVRI WKRAPDGVWD CSDVLDGVHE RTVRSCAWSP DGKLLATASF DGTTAIWEYS
101: GGDFECVATL EGHDNEVKSV SWSQSGSLLA TCSRDKAVWI WEVQPGNEHE CVAVLQGHTQ DVKMVQWHPI LNVLVSVSYD NTIRVWADDG DDDWHCVQTL
201: TEAGNSGHSS TVWSVSFNQK GDRMVTCSDD CTLKIWDTSV DLSQPTTGEG HESWQHLSTL SGYHGRTIFS AHWSSEDIIA SGAGDDAICL FTEEKSTMVE
301: GPSYRLILKK EKAHDMDINC VRWCPQDPRV LASASDDG
101: GGDFECVATL EGHDNEVKSV SWSQSGSLLA TCSRDKAVWI WEVQPGNEHE CVAVLQGHTQ DVKMVQWHPI LNVLVSVSYD NTIRVWADDG DDDWHCVQTL
201: TEAGNSGHSS TVWSVSFNQK GDRMVTCSDD CTLKIWDTSV DLSQPTTGEG HESWQHLSTL SGYHGRTIFS AHWSSEDIIA SGAGDDAICL FTEEKSTMVE
301: GPSYRLILKK EKAHDMDINC VRWCPQDPRV LASASDDG
001: MDLMEKNLEL VEIQKLEGHT DRVWSVAWNP VSSHADGVSP ILASCSGDNT VRIWEQSSLS RSWTCKTVLE ETHTRTVRSC AWSPSGQLLA TASFDGTTGI
101: WKNYGSEFEC ISTLEGHENE VKSVSWNASG SCLATCSRDK SVWIWEVLEG NEYDCAAVLT GHTQDVKMVQ WHPTMDVLFS CSYDNTIKVW WSEDDDGEYQ
201: CVQTLGESNN GHSSTVWSIS FNAAGDKMVT CSDDLTLKIW GTDIAKMQSG EEYAPWIHLC TLSGYHDRTI YSAHWSRDDI IASGAGDNAI RLFVDSKHDS
301: VDGPSYNLLL KKNKAHENDV NSVQWSPGEG NRLLASASDD GMVKIWQLAT KP
101: WKNYGSEFEC ISTLEGHENE VKSVSWNASG SCLATCSRDK SVWIWEVLEG NEYDCAAVLT GHTQDVKMVQ WHPTMDVLFS CSYDNTIKVW WSEDDDGEYQ
201: CVQTLGESNN GHSSTVWSIS FNAAGDKMVT CSDDLTLKIW GTDIAKMQSG EEYAPWIHLC TLSGYHDRTI YSAHWSRDDI IASGAGDNAI RLFVDSKHDS
301: VDGPSYNLLL KKNKAHENDV NSVQWSPGEG NRLLASASDD GMVKIWQLAT KP
Arabidopsis Description
CIA1Protein CIA1 [Source:UniProtKB/Swiss-Prot;Acc:O80990]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.