CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32243
CDY34469

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26060.1	CDY32243	AT4G16440.1	23104832
AT2G26060.1	CDY34469	AT4G16440.1	23104832

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014107.1-P	Field mustard	cytosol, peroxisome, plastid	90.44	77.73
AT2G26060.1	Thale cress	cytosol	49.45	76.42
CDX76728	Canola	cytosol	47.98	75.43
CDY11502	Canola	cytosol	47.98	75.43
VIT_08s0007g03360.t01	Wine grape	cytosol	42.28	66.86
KRH67917	Soybean	cytosol	39.52	62.68
PGSC0003DMT400043378	Potato	cytosol	30.7	61.4
GSMUA_Achr5P26190_001	Banana	cytosol	38.97	60.92
Solyc09g074400.2.1	Tomato	cytosol	38.97	60.4
HORVU7Hr1G101230.1	Barley	cytosol	36.03	57.99
EER98280	Sorghum	cytosol, nucleus, plastid	36.4	57.39
Zm00001d019299_P001	Maize	cytosol	36.21	56.45
Os07t0252000-01	Rice	cytosol	36.58	56.37
TraesCS7D01G435400.1	Wheat	cytosol	36.21	56.29
TraesCS7B01G346200.1	Wheat	cytosol, nucleus, plastid	36.21	56.29
TraesCS7A01G446500.1	Wheat	cytosol	36.03	56.0
TraesCS7D01G435500.1	Wheat	cytosol	34.56	53.87
TraesCS7B01G346100.1	Wheat	cytosol	34.56	53.71
TraesCS7A01G446400.2	Wheat	cytosol	34.01	53.31
CDX77335	Canola	cytosol	38.42	49.53
KRH33352	Soybean	plastid	22.43	48.03
Solyc09g009410.2.1	Tomato	cytosol, nucleus	26.1	40.8
CDY57442	Canola	cytosol	7.54	18.64
CDX68590	Canola	cytosol	10.85	18.38
CDY43529	Canola	cytosol	10.85	18.38
CDY03567	Canola	cytosol	10.66	18.07
CDY14200	Canola	cytosol	10.66	18.07
CDY27109	Canola	cytosol	3.68	17.7
CDY40782	Canola	cytosol	3.68	17.7
CDY43370	Canola	cytosol	3.68	17.7
CDY72066	Canola	cytosol	3.68	17.7
CDX92625	Canola	cytosol	3.68	17.7
CDY18648	Canola	cytosol	17.28	16.43
CDX81324	Canola	cytosol	17.46	15.47
CDY12836	Canola	extracellular, vacuole	2.02	12.94
CDX87098	Canola	nucleus	15.62	12.72
CDY19814	Canola	nucleus	15.44	12.57
CDY05473	Canola	nucleus	15.07	12.31
CDY05378	Canola	nucleus	14.52	11.9
CDX79933	Canola	nucleus	9.01	11.42
CDY23845	Canola	nucleus	8.82	11.16
CDY06918	Canola	cytosol, nucleus, peroxisome	9.56	10.72
CDY57444	Canola	cytosol, mitochondrion	5.33	10.0
CDY14776	Canola	mitochondrion	9.38	9.24
CDY54973	Canola	nucleus	14.52	8.49
CDY22910	Canola	nucleus	14.34	8.38
CDX69423	Canola	cytosol, mitochondrion, nucleus, plastid	13.05	8.18
CDY16982	Canola	cytosol, mitochondrion, nucleus, plastid	13.05	8.1
CDY38089	Canola	cytosol, mitochondrion, nucleus, plastid	12.87	8.06
CDX85488	Canola	cytosol, mitochondrion, nucleus, plastid	12.87	8.04
CDY12834	Canola	endoplasmic reticulum, extracellular	2.21	6.45

Protein Annotations

Gene3D:2.130.10.10	MapMan:7.11.3.2.1	GO:A0A078HWU6	UniProt:A0A078HWU6	EnsemblPlants:CDY41854	ProteinID:CDY41854
ProteinID:CDY41854.1	InterPro:CIAO1/Cia1	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016226
GO:GO:0097361	EnsemblPlantsGene:GSBRNA2T00073786001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	HAMAP:MF_03037
InterPro:NA-bd_OB-fold	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19920	SMART:SM00320	SUPFAM:SSF50249	SUPFAM:SSF50978	UniParc:UPI0004EDB300	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

BnaA08g03490DProbable cytosolic iron-sulfur protein assembly protein CIAO1 homolog [Source:UniProtKB/TrEMBL;Acc:A0A078HWU6]

Coordinates

chrLK032508:-:221609..226463

Molecular Weight (calculated)

60297.1 Da

IEP (calculated)

5.874

GRAVY (calculated)

-0.241

Length

544 amino acids

Sequence
(BLAST)

001: MDKKISFTDD LPDGTISALL QKQDNVVQIG GRSTLITPLV VLLHGVSNDN PLAPIIRRLG VTLYRTSGEH SILFDHDLER YPFPACTKKL DRSAASLRCN
101: QCVNHNVTNV VKYRVELLVD DGKNYAIFLV FDKEMLKLAK QDAAALLLDE VNGGVGKKLK AELGGKDLDF HIRVTPYNFS PDHRTFTIFA ISDSFNTEGN
201: VGKHPLPASA SNTSTTDVKE GGAYTPMDLM EKLELVELPK LEGHTDRVWN VFWNPVSTLP ILASCSGNNT VRIWEHNSLS HSWSCKTVLE ETHTRTVRSC
301: AWSPSGKLLA TASFDGTTAI WQNFGDEFEC ISNLEGHENK VKSVSWNAAG SYLATCSRDK SVWIWEVLGG ANEYDCAAVV NGHTQDLKMV QWHPTMNVLF
401: SCSFDNTING HSSTVWAISF NAAGDKMVTC SDDLTLKIWE TDIAMMHSGE AYAYWTHLCT LSGYHDRTIY SAHWSRDNII ASGAGDDAIR LFADGPSYIL
501: LLKKENAHDV DVNSVQWSPG EENRLLASAS DDGMVKIWQL ATKQ

Best Arabidopsis Sequence Match ( AT2G26060.1 )
(BLAST)

001: MDLMEKNLEL VEIQKLEGHT DRVWSVAWNP VSSHADGVSP ILASCSGDNT VRIWEQSSLS RSWTCKTVLE ETHTRTVRSC AWSPSGQLLA TASFDGTTGI
101: WKNYGSEFEC ISTLEGHENE VKSVSWNASG SCLATCSRDK SVWIWEVLEG NEYDCAAVLT GHTQDVKMVQ WHPTMDVLFS CSYDNTIKVW WSEDDDGEYQ
201: CVQTLGESNN GHSSTVWSIS FNAAGDKMVT CSDDLTLKIW GTDIAKMQSG EEYAPWIHLC TLSGYHDRTI YSAHWSRDDI IASGAGDNAI RLFVDSKHDS
301: VDGPSYNLLL KKNKAHENDV NSVQWSPGEG NRLLASASDD GMVKIWQLAT KP

Arabidopsis Description

CIA1Protein CIA1 [Source:UniProtKB/Swiss-Prot;Acc:O80990]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.