Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS7A01G446400.2 | Wheat | cytosol | 94.84 | 95.39 |
TraesCS7B01G346100.1 | Wheat | cytosol | 94.56 | 94.29 |
HORVU7Hr1G101230.1 | Barley | cytosol | 84.24 | 86.98 |
TraesCS7D01G435400.1 | Wheat | cytosol | 86.53 | 86.29 |
Os07t0252000-01 | Rice | cytosol | 79.94 | 79.04 |
EER98280 | Sorghum | cytosol, nucleus, plastid | 77.65 | 78.55 |
Zm00001d019299_P001 | Maize | cytosol | 78.22 | 78.22 |
GSMUA_Achr5P26190_001 | Banana | cytosol | 63.9 | 64.08 |
VIT_08s0007g03360.t01 | Wine grape | cytosol | 62.18 | 63.08 |
CDX76728 | Canola | cytosol | 61.03 | 61.56 |
CDY11502 | Canola | cytosol | 60.74 | 61.27 |
Bra007771.1-P | Field mustard | cytosol | 60.46 | 60.98 |
KRH67917 | Soybean | cytosol | 59.89 | 60.93 |
Solyc09g074400.2.1 | Tomato | cytosol | 60.74 | 60.4 |
AT2G26060.1 | Thale cress | cytosol | 59.6 | 59.09 |
PGSC0003DMT400043378 | Potato | cytosol | 45.85 | 58.82 |
AT4G32990.1 | Thale cress | cytosol | 52.44 | 55.79 |
Solyc09g009410.2.1 | Tomato | cytosol, nucleus | 41.55 | 41.67 |
KRH33352 | Soybean | plastid | 30.09 | 41.34 |
CDY41854 | Canola | cytosol | 53.87 | 34.56 |
CDX77335 | Canola | cytosol | 34.1 | 28.2 |
Bra014107.1-P | Field mustard | cytosol, peroxisome, plastid | 46.99 | 25.91 |
TraesCS4D01G145700.1 | Wheat | cytosol | 16.33 | 17.7 |
TraesCS4D01G160600.1 | Wheat | cytosol, nucleus | 20.92 | 14.34 |
TraesCS2D01G235100.1 | Wheat | nucleus | 22.06 | 13.85 |
TraesCS2D01G182600.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 20.92 | 13.47 |
TraesCS5D01G324200.2 | Wheat | nucleus | 22.35 | 11.89 |
TraesCS7D01G496500.1 | Wheat | nucleus | 21.78 | 11.67 |
TraesCS7D01G500800.1 | Wheat | mitochondrion | 19.77 | 7.82 |
TraesCS2D01G446600.2 | Wheat | mitochondrion | 19.77 | 7.78 |
Protein Annotations
Gene3D:2.130.10.10 | MapMan:7.11.3.2.1 | InterPro:CIAO1/Cia1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016226 |
GO:GO:0097361 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | HAMAP:MF_03037 | PFAM:PF00400 |
PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19920 | SMART:SM00320 |
SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS7D01G435500 | EnsemblPlants:TraesCS7D01G435500.1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | TIGR:cd00200 | : | : | : |
Description
No Description!
Coordinates
chr7D:-:554586410..554590336
Molecular Weight (calculated)
38233.1 Da
IEP (calculated)
4.517
GRAVY (calculated)
-0.338
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGTAELRE THRLVGHADR AWALAWNPNP GAGAGPVLAS CGADKTVRIW KRAPDGAWHC SDVLEGVHES TVRSCAWSPD GKLLADASFD GTTAIWEYSG
101: GDFELVDTLE GHVNEVKSVS WSQSGSMVAT CSRDRAAWIW EILPGNDHEC VDVLEGHTED VKMVQWHPFF DVLVSVSYDN TIRVWADDGD GKWPCVQTLT
201: EAGNSGHSST VWSISFNQKG DRMVTCSDDC TLKIWDASID LSQPTTGEGH ESWRHISTLS GYHGRTIFSV HWSSEGVIAS GAGDDAICLF AEENSMVEGP
301: SYRLILKKEK AHDTDVNCVR WCPQNPRVLA SVSDDGTVKL WELQGDILD
101: GDFELVDTLE GHVNEVKSVS WSQSGSMVAT CSRDRAAWIW EILPGNDHEC VDVLEGHTED VKMVQWHPFF DVLVSVSYDN TIRVWADDGD GKWPCVQTLT
201: EAGNSGHSST VWSISFNQKG DRMVTCSDDC TLKIWDASID LSQPTTGEGH ESWRHISTLS GYHGRTIFSV HWSSEGVIAS GAGDDAICLF AEENSMVEGP
301: SYRLILKKEK AHDTDVNCVR WCPQNPRVLA SVSDDGTVKL WELQGDILD
001: MDLMEKNLEL VEIQKLEGHT DRVWSVAWNP VSSHADGVSP ILASCSGDNT VRIWEQSSLS RSWTCKTVLE ETHTRTVRSC AWSPSGQLLA TASFDGTTGI
101: WKNYGSEFEC ISTLEGHENE VKSVSWNASG SCLATCSRDK SVWIWEVLEG NEYDCAAVLT GHTQDVKMVQ WHPTMDVLFS CSYDNTIKVW WSEDDDGEYQ
201: CVQTLGESNN GHSSTVWSIS FNAAGDKMVT CSDDLTLKIW GTDIAKMQSG EEYAPWIHLC TLSGYHDRTI YSAHWSRDDI IASGAGDNAI RLFVDSKHDS
301: VDGPSYNLLL KKNKAHENDV NSVQWSPGEG NRLLASASDD GMVKIWQLAT KP
101: WKNYGSEFEC ISTLEGHENE VKSVSWNASG SCLATCSRDK SVWIWEVLEG NEYDCAAVLT GHTQDVKMVQ WHPTMDVLFS CSYDNTIKVW WSEDDDGEYQ
201: CVQTLGESNN GHSSTVWSIS FNAAGDKMVT CSDDLTLKIW GTDIAKMQSG EEYAPWIHLC TLSGYHDRTI YSAHWSRDDI IASGAGDNAI RLFVDSKHDS
301: VDGPSYNLLL KKNKAHENDV NSVQWSPGEG NRLLASASDD GMVKIWQLAT KP
Arabidopsis Description
CIA1Protein CIA1 [Source:UniProtKB/Swiss-Prot;Acc:O80990]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.