Factsheet for GSMUA_Achr5P26190_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P29280_001
GSMUA_Achr4P03650_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26060.1	GSMUA_Achr3P29280_001	AT4G16440.1	23104832
AT2G26060.1	GSMUA_Achr4P03650_001	AT4G16440.1	23104832

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g03360.t01	Wine grape	cytosol	74.43	75.29
KRH67917	Soybean	cytosol	70.98	72.01
PGSC0003DMT400043378	Potato	cytosol	55.75	71.32
Solyc09g074400.2.1	Tomato	cytosol	71.26	70.66
Zm00001d019299_P001	Maize	cytosol	70.4	70.2
HORVU7Hr1G101230.1	Barley	cytosol	67.53	69.53
EER98280	Sorghum	cytosol, nucleus, plastid	68.39	68.99
Os07t0252000-01	Rice	cytosol	69.83	68.84
CDY11502	Canola	cytosol	68.1	68.5
Bra007771.1-P	Field mustard	cytosol	67.82	68.21
CDX76728	Canola	cytosol	67.53	67.92
TraesCS7D01G435400.1	Wheat	cytosol	68.1	67.71
TraesCS7B01G346200.1	Wheat	cytosol, nucleus, plastid	67.82	67.43
TraesCS7A01G446500.1	Wheat	cytosol	67.53	67.14
AT2G26060.1	Thale cress	cytosol	67.82	67.05
TraesCS7D01G435500.1	Wheat	cytosol	64.08	63.9
TraesCS7B01G346100.1	Wheat	cytosol	63.79	63.43
TraesCS7A01G446400.2	Wheat	cytosol	63.22	63.4
AT4G32990.1	Thale cress	cytosol	57.47	60.98
KRH33352	Soybean	plastid	38.79	53.15
Solyc09g009410.2.1	Tomato	cytosol, nucleus	47.99	47.99
CDY41854	Canola	cytosol	60.92	38.97
CDX77335	Canola	cytosol	40.23	33.18
Bra014107.1-P	Field mustard	cytosol, peroxisome, plastid	53.45	29.38
GSMUA_Achr9P22400_001	Banana	cytosol	12.36	25.15
GSMUA_Achr2P01810_001	Banana	cytosol	16.67	18.07
GSMUA_Achr11P...	Banana	nucleus	21.55	17.16
GSMUA_Achr6P34790_001	Banana	extracellular	6.9	15.38
GSMUA_Achr6P34780_001	Banana	cytosol	19.25	14.29
GSMUA_Achr7P26980_001	Banana	nucleus	21.55	9.82
GSMUA_Achr11P...	Banana	mitochondrion	21.26	8.03
GSMUA_Achr11P...	Banana	cytosol, golgi, plastid	20.4	7.55
GSMUA_Achr9P22410_001	Banana	cytosol	2.01	1.88

Protein Annotations

Gene3D:2.130.10.10	MapMan:7.11.3.2.1	InterPro:CIAO1/Cia1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016226
GO:GO:0097361	EnsemblPlantsGene:GSMUA_Achr5G26190_001	EnsemblPlants:GSMUA_Achr5P26190_001	EnsemblPlants:GSMUA_Achr5T26190_001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:M0T1U4	HAMAP:MF_03037	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19920	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00029695BC
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

Putative Probable cytosolic iron-sulfur protein assembly protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G26190_001]

Coordinates

chr5:+:27072279..27080989

Molecular Weight (calculated)

38315.5 Da

IEP (calculated)

4.598

GRAVY (calculated)

-0.335

Length

348 amino acids

Sequence
(BLAST)

001: MELLDGELEL REIQKLEGHT DRVWSLAWNP AATGVAGMLA SCSGDKTVRI WQKGPSGSWN CSSVLEDTHT RTVRSCAWSP SGKLLATASF DGTTAVWEHV
101: GGEFECVATL EGHENEVKSV SWNASGSLLA TCARDKTVWI WEAQPGNEFE CVSVLQGHTQ DVKMVQWHPF LDILVSVGYD NSVKVWTEDG DDDWHCVLTL
201: GEANSGHTST VWALSFNSAG DRMVTCSDDL TLKIWDTSQN PSETSGDGNG SWSHLCTLSG YHDRTIFSVH WSREGLIASG AADDAIRLFT ESKDSLVDQP
301: SYKMLVKKEK AHDMDVNSVQ WNMKEPRLLA SASDDGTIKI WELSVVSK

Best Arabidopsis Sequence Match ( AT2G26060.1 )
(BLAST)

001: MDLMEKNLEL VEIQKLEGHT DRVWSVAWNP VSSHADGVSP ILASCSGDNT VRIWEQSSLS RSWTCKTVLE ETHTRTVRSC AWSPSGQLLA TASFDGTTGI
101: WKNYGSEFEC ISTLEGHENE VKSVSWNASG SCLATCSRDK SVWIWEVLEG NEYDCAAVLT GHTQDVKMVQ WHPTMDVLFS CSYDNTIKVW WSEDDDGEYQ
201: CVQTLGESNN GHSSTVWSIS FNAAGDKMVT CSDDLTLKIW GTDIAKMQSG EEYAPWIHLC TLSGYHDRTI YSAHWSRDDI IASGAGDNAI RLFVDSKHDS
301: VDGPSYNLLL KKNKAHENDV NSVQWSPGEG NRLLASASDD GMVKIWQLAT KP

Arabidopsis Description

CIA1Protein CIA1 [Source:UniProtKB/Swiss-Prot;Acc:O80990]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.