Factsheet for GSMUA_Achr9P22410_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P11610_001
GSMUA_Achr4P14200_001
GSMUA_Achr7P10670_001
GSMUA_Achr7P11400_001
GSMUA_Achr7P26980_001
GSMUA_Achr9P09310_001
GSMUA_Achr9P22400_001
GSMUA_Achr9P22410_001
GSMUA_Achr9P26740_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25150.1	GSMUA_Achr7P10670_001	AT1G17440.1	17340043
AT5G25150.1	GSMUA_Achr4P14200_001	AT1G27720.1	17340043
AT5G25150.1	GSMUA_Achr2P11610_001	AT1G32750.1	17340043
AT5G25150.1	GSMUA_Achr10P...	AT1G54140.1	17340043
AT5G25150.1	GSMUA_Achr7P11400_001	AT1G54140.1	17340043
AT5G25150.1	GSMUA_Achr10P...	AT3G10070.1	17340043
AT5G25150.1	GSMUA_Achr11P...	AT4G34340.1	17340043
AT5G25150.1	GSMUA_Achr9P09310_001	AT4G34340.1	17340043
AT5G25150.1	GSMUA_Achr9P26740_001	AT4G34340.1	17340043
AT5G25150.1	GSMUA_Achr7P26980_001	AT5G25150.1	17340043
AT5G25150.1	GSMUA_Achr9P22400_001	AT5G25150.1	17340043
AT5G25150.1	GSMUA_Achr9P22410_001	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG20501	Sorghum	nucleus	69.17	39.27
VIT_04s0008g05780.t01	Wine grape	nucleus	69.17	38.17
HORVU7Hr1G113760.2	Barley	nucleus	66.76	37.96
Zm00001d046810_P002	Maize	nucleus	68.36	37.89
TraesCS5A01G317800.1	Wheat	nucleus	66.49	37.8
Os06t0649500-01	Rice	nucleus	66.22	37.77
TraesCS5B01G318400.1	Wheat	nucleus	66.22	37.65
TraesCS5D01G324200.2	Wheat	nucleus	66.22	37.65
TraesCS7A01G508300.2	Wheat	nucleus	65.68	37.35
TraesCS7D01G496500.1	Wheat	nucleus	65.15	37.33
KRH52333	Soybean	nucleus	63.0	35.44
KRH61671	Soybean	nucleus	63.0	35.13
GSMUA_Achr7P26980_001	Banana	nucleus	71.85	35.08
Solyc06g065700.2.1	Tomato	nucleus	63.27	34.45
CDY19814	Canola	nucleus	60.86	33.98
Bra036534.1-P	Field mustard	nucleus	60.86	33.98
AT5G25150.1	Thale cress	nucleus	60.86	33.93
CDX87098	Canola	nucleus	60.32	33.68
CDY05473	Canola	nucleus	58.98	33.03
CDY05378	Canola	nucleus	58.18	32.68
Bra020485.1-P	Field mustard	nucleus	58.18	32.58
KRH05348	Soybean	nucleus	56.84	32.22
HORVU0Hr1G022460.1	Barley	nucleus	36.19	27.61
TraesCS7B01G416400.1	Wheat	nucleus	35.12	26.79
GSMUA_Achr6P34780_001	Banana	cytosol	8.85	7.04
GSMUA_Achr2P01810_001	Banana	cytosol	5.63	6.54
Zm00001d016330_P001	Maize	extracellular	2.14	5.52
GSMUA_Achr11P...	Banana	cytosol, golgi, plastid	13.4	5.32
GSMUA_Achr11P...	Banana	mitochondrion	11.8	4.78
GSMUA_Achr11P...	Banana	nucleus	5.36	4.58
Zm00001d053142_P001	Maize	nucleus	1.61	3.73
GSMUA_Achr5P26190_001	Banana	cytosol	1.88	2.01
KRH15679	Soybean	cytosol	0.54	1.57
GSMUA_Achr6P34790_001	Banana	extracellular	0.54	1.28
GSMUA_Achr9P22400_001	Banana	cytosol	0.54	1.17
KRG99418	Soybean	cytosol, extracellular, plastid	0.27	1.15
Zm00001d025112_P001	Maize	cytosol, nucleus, plastid	0.54	1.09
Zm00001d044810_P001	Maize	nucleus	0.27	0.78

Protein Annotations

Gene3D:1.25.40.500	MapMan:15.3.4.3.1	MapMan:15.3.5.3.5	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr9G22410_001	EnsemblPlants:GSMUA_Achr9P22410_001	EnsemblPlants:GSMUA_Achr9T22410_001	InterPro:IPR001680	InterPro:IPR006594	InterPro:IPR037264
InterPro:LisH	UniProt:M0U2K0	PFAM:PF04494	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50896
PANTHER:PTHR19879	PANTHER:PTHR19879:SF1	SUPFAM:SSF160897	SUPFAM:SSF50978	InterPro:TFIID_NTD2	InterPro:TFIID_NTD2_sf
UniParc:UPI000296BCAA	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

Putative Transcription initiation factor TFIID subunit 5 [Source:GMGC_GENE;Acc:GSMUA_Achr9G22410_001]

Coordinates

chr9:-:27500258..27511610

Molecular Weight (calculated)

42431.2 Da

IEP (calculated)

5.792

GRAVY (calculated)

-0.480

Length

373 amino acids

Sequence
(BLAST)

001: MEEEEIQKAV AAYLRKKGFT NTELALQEEQ NRVSFSSNSD HSVSRLENGP VRYSDGYSKL RLWAYSSLDL YKHELLRVLF PVYIHCFMDL VAGGHVHEAR
101: NFFHTFREDH ESMHLRDLQK LEGILSPLHL EEIELSRSFR QNKFKIKMCE YSYDLLLQYL QKTQSFTMRG VINEHIDFEV SPGQPTSSSG DADFVTIEGR
201: NNDLVRQINQ KEIHWGVLED SLEQHLERPV SDSEKAESAN KEEEAEEDKR PLDGGKQGIP VKMVKKDKLV NMVGKNVRSE TSAVSVAPRV KPELTLPTTL
301: VEVEQAILED LRSRVQLNSL ALPSISFYTF VNTCNRLNCS SISQDGSLVA GGFSDSSLKV WDISKIGQLV KSC

Best Arabidopsis Sequence Match ( AT5G25150.1 )
(BLAST)

001: MDPEQINEFV VGYLKKKGFS SAAKDLESYH HQNNNGSSFT SVDYHNDPEL TKLIRSFSQQ EDDPTRYREG YSKLRSWAYN SLDLYKHELL RVMYPVFIHC
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RFSRRNLLFA AGAISKPAN

Arabidopsis Description

TAF5Transcription initiation factor TFIID subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6S7B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.