Factsheet for VIT_04s0008g05780.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g00960.t01
VIT_04s0008g05780.t01
VIT_08s0007g03700.t01
VIT_08s0040g01420.t01
VIT_09s0002g01160.t01
VIT_09s0002g01420.t01
VIT_12s0028g03940.t01
VIT_18s0001g09310.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25150.1	VIT_09s0002g01420.t01	AT1G17440.1	17340043
AT5G25150.1	VIT_18s0001g09310.t01	AT1G27720.1	17340043
AT5G25150.1	VIT_12s0028g03940.t01	AT1G32750.1	17340043
AT5G25150.1	VIT_09s0002g01160.t01	AT1G54140.1	17340043
AT5G25150.1	VIT_08s0007g03700.t01	AT3G10070.1	17340043
AT5G25150.1	VIT_08s0040g01420.t01	AT4G34340.1	17340043
AT5G25150.1	VIT_04s0008g05780.t01	AT5G25150.1	17340043
AT5G25150.1	VIT_03s0038g00960.t01	AT5G45600.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P22400_001	Banana	cytosol	21.45	84.8
Zm00001d044810_P001	Maize	nucleus	16.12	84.5
KRH52333	Soybean	nucleus	79.73	81.3
KRH61671	Soybean	nucleus	79.88	80.72
HORVU0Hr1G022460.1	Barley	nucleus	55.77	77.1
Solyc06g065700.2.1	Tomato	nucleus	77.66	76.64
Zm00001d053142_P001	Maize	nucleus	18.2	76.4
AT5G25150.1	Thale cress	nucleus	75.59	76.38
TraesCS7B01G416400.1	Wheat	nucleus	55.03	76.07
Bra036534.1-P	Field mustard	nucleus	74.56	75.45
CDY19814	Canola	nucleus	74.41	75.3
KXG20501	Sorghum	nucleus	73.08	75.19
CDX87098	Canola	nucleus	74.26	75.15
KRH05348	Soybean	nucleus	73.08	75.08
TraesCS5D01G324200.2	Wheat	nucleus	72.04	74.24
HORVU7Hr1G113760.2	Barley	nucleus	72.04	74.24
TraesCS5B01G318400.1	Wheat	nucleus	71.89	74.09
CDY05473	Canola	nucleus	72.93	74.02
Bra020485.1-P	Field mustard	nucleus	72.78	73.87
CDY05378	Canola	nucleus	72.49	73.8
Zm00001d046810_P002	Maize	nucleus	73.37	73.7
TraesCS7D01G496500.1	Wheat	nucleus	70.86	73.58
KRG99418	Soybean	cytosol, extracellular, plastid	9.17	71.26
Zm00001d025112_P001	Maize	cytosol, nucleus, plastid	19.08	70.49
Os07t0205200-02	Rice	cytosol, nucleus	25.89	69.17
GSMUA_Achr9P22410_001	Banana	cytosol	38.17	69.17
GSMUA_Achr7P26980_001	Banana	nucleus	74.7	66.1
Zm00001d016330_P001	Maize	extracellular	14.05	65.52
TraesCS7A01G467500.1	Wheat	nucleus	21.6	60.58
KRH15679	Soybean	cytosol	10.06	53.54
VIT_13s0084g00760.t01	Wine grape	plastid	4.73	29.09
VIT_11s0016g01730.t01	Wine grape	cytosol	12.87	27.1
VIT_18s0001g09610.t01	Wine grape	cytosol	7.4	22.83
VIT_08s0007g03360.t01	Wine grape	cytosol	10.8	21.22
VIT_08s0007g05930.t01	Wine grape	nucleus	16.27	16.69
VIT_07s0129g00690.t01	Wine grape	nucleus	14.64	16.58
VIT_16s0039g01690.t01	Wine grape	cytosol	18.2	13.67
VIT_18s0001g09600.t01	Wine grape	cytosol	10.21	12.61
VIT_08s0007g04690.t01	Wine grape	nucleus	17.16	12.18
VIT_00s0214g00020.t01	Wine grape	mitochondrion, plastid	2.07	9.72

Protein Annotations

Gene3D:1.25.40.500	EntrezGene:100254222	wikigene:100254222	MapMan:15.3.4.3.1	MapMan:15.3.5.3.5	Gene3D:2.130.10.10
EMBL:AM463867	ProteinID:CAN63613	ProteinID:CAN63613.1	ProteinID:CBI21070	ProteinID:CBI21070.3	UniProt:D7SUX1
EMBL:FN595231	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR006594	InterPro:IPR015943	InterPro:IPR017986	InterPro:IPR037264	EntrezGene:LOC100254222	wikigene:LOC100254222
InterPro:LisH	PFAM:PF00400	PFAM:PF04494	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PFscan:PS50896	PANTHER:PTHR19879	PANTHER:PTHR19879:SF1	SMART:SM00320	SUPFAM:SSF160897
SUPFAM:SSF50978	InterPro:TFIID_NTD2	InterPro:TFIID_NTD2_sf	UniParc:UPI00015C866D	ArrayExpress:VIT_04s0008g05780	EnsemblPlantsGene:VIT_04s0008g05780
EnsemblPlants:VIT_04s0008g05780.t01	unigene:Vvi.15687	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	RefSeq:XP_002285276	RefSeq:XP_002285276.2	RefSeq:XP_003631761	RefSeq:XP_003631761.1	SEG:seg

Description

No Description!

Coordinates

chr4:+:5305221..5339650

Molecular Weight (calculated)

75128.9 Da

IEP (calculated)

6.677

GRAVY (calculated)

-0.387

Length

676 amino acids

Sequence
(BLAST)

001: MEEEEIEKAV IAYLKKKGFK QTELAFQEEH HQHQNQQTKN SSSSISSSTD PDIAKHILSF SESENIPARY HEGYSKLRSW TYSSLDLYKH ELLRVLYPVF
101: IHCFMDLVAK GHIQEARNFF NSFREDHEMM HLRDLQKLEG VLSPSHLEEM EFAHSLRQSK VSIKICQYSY ELLLQYLHKT QSITMLGVIN EHINFQVSPG
201: QPASISDDAE VVTLIGSSQD DANQINQKEI HWGLLEGSLE ERLEKAGGLL SDSEKAEGEV KETDTEENKK RSAEGGKQGS SIKKLKKDKV VGAAGKTARP
301: EANAVSMAPR VKPELALPVM PTEVEQSILE DLRNRVQLSS MALPSVSFYT FINTHNSLNC SSISHDGSLV AGGFSDSSLK VWDMSKLGQQ AATSIMQGDN
401: DLAPTEQILG TSGGKRSYTL FQGHSGPVYS ATFSPLGDFI LSSSADSTIR LWSTKLNANL VCYKGHNYPV WDVQFSPMGH YFASSSHDRT ARIWSMDRIQ
501: PLRIMAGHLS DVDCVQWHIN CNYIATGSSD KTVRLWDVQS GECVRIFIGH RSMVLSLAMS PDGQYMASGD EDGTIMMWDL SSGRCVMPLM GHMSCVWSLA
601: FSCEGSLLAS GSADSTVKLW DVTTSTKVPR SEENKSGNTS RLRSLKTLPT KSTPVYSLRF SRRNLLFAAG ALSKSG

Best Arabidopsis Sequence Match ( AT5G25150.1 )
(BLAST)

001: MDPEQINEFV VGYLKKKGFS SAAKDLESYH HQNNNGSSFT SVDYHNDPEL TKLIRSFSQQ EDDPTRYREG YSKLRSWAYN SLDLYKHELL RVMYPVFIHC
101: YMDLVGKGHT QEARAFFNSF RKDHEMVHLR DLQKLEGVLS PSHLEEMEFA RSLRKSKVNI KFCQYSYELL LQYLHSTVST LMLGIINEHI NFQVYSGQPT
201: SSSDDIEAVT IVGSFQDTAN HINQKEIQWG LLEDSLEDRL EKTGGLLSDS EKGQGESKDG DADDSKKRST EIGKQGSSLK KLKKDKAGNA TAKVARLETI
301: TVSPAPRVKP ELALPVMSTD VEQSILEDLR NRVQLSSVAM PSVSFYTFVN THNGLNCSSI SHDGSLVAGG FSDSSIKVWD MAKIGQAGSG ALQAENDSSD
401: QSIGPNGRRS YTLLLGHSGP VYSATFSPPG DFVLSSSADT TIRLWSTKLN ANLVCYKGHN YPVWDAQFSP FGHYFASCSH DRTARIWSMD RIQPLRIMAG
501: HLSDVDCVQW HPNCNYIATG SSDKTVRLWD VQTGECVRIF IGHRSMVLSL AMSPDGRYMA SGDEDGTIMM WDLSTARCIT PLMGHNSCVW SLSYSGEGSL
601: LASGSADCTV KLWDVTSSTK LTKAEEKNGN SNRLRSLRTF PTKSTPVHAL RFSRRNLLFA AGAISKPAN

Arabidopsis Description

TAF5Transcription initiation factor TFIID subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6S7B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.