Factsheet for VIT_13s0084g00760.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g01730.t01	Wine grape	cytosol	63.64	21.81
Zm00001d048691_P001	Maize	cytosol, extracellular, mitochondrion	54.55	20.2
EES08930	Sorghum	cytosol	54.55	18.63
TraesCS4A01G165700.1	Wheat	cytosol, nucleus	54.55	18.63
TraesCS4D01G145700.1	Wheat	cytosol	54.55	18.63
Os11t0660300-01	Rice	cytosol	54.55	18.58
GSMUA_Achr2P01810_001	Banana	cytosol	53.64	18.38
TraesCS4B01G144300.1	Wheat	cytosol	53.64	18.32
HORVU4Hr1G033170.1	Barley	cytosol	53.64	17.25
VIT_18s0001g09610.t01	Wine grape	cytosol	16.36	8.22
VIT_08s0007g03360.t01	Wine grape	cytosol	19.09	6.1
VIT_04s0008g05780.t01	Wine grape	nucleus	29.09	4.73
VIT_07s0129g00690.t01	Wine grape	nucleus	23.64	4.36
VIT_18s0001g09600.t01	Wine grape	cytosol	19.09	3.84
VIT_08s0007g05930.t01	Wine grape	nucleus	22.73	3.79
VIT_16s0039g01690.t01	Wine grape	cytosol	20.91	2.56
VIT_08s0007g04690.t01	Wine grape	nucleus	19.09	2.21
VIT_00s0214g00020.t01	Wine grape	mitochondrion, plastid	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	ProteinID:CCB58645	ProteinID:CCB58645.1	UniProt:F6HVD3	EMBL:FN596254
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44090	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI00021099B6	ArrayExpress:VIT_13s0084g00760	EnsemblPlantsGene:VIT_13s0084g00760	EnsemblPlants:VIT_13s0084g00760.t01	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

No Description!

Coordinates

chr13:-:19960858..19961243

Molecular Weight (calculated)

11789.1 Da

IEP (calculated)

11.041

GRAVY (calculated)

0.139

Length

110 amino acids

Sequence
(BLAST)

001: MSGHASWVLS VDVSPGGAAI ATGSSDKTAR LWDLSMRATV QTMSNHADQV WGVTFRPPGK ASVRAGRLAN VSNDRSISLF NNLGTFGVLS SPQLFFLPLK
101: QFAYLSIFSL

Best Arabidopsis Sequence Match ( AT4G29830.1 )
(BLAST)

001: MKLAGLKSIE NAHEDSVWAA TWVPATEDRP ALLLTGSLDE TVKLWRPDEL DLVRTNTGHS LGVAALAAHP SGIIAASSSI DSFVRVFDVD TNATIAVLEA
101: PPSEVWGMQF EPKGTILAVA GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG TICVFDVDRS KLLHQLEGHN
201: MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301: VRAGRLASVS DDKSVSLYDY S

Arabidopsis Description

VIP3WD repeat-containing protein VIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZQ5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.